Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq54669 129 6e-25 >seq54669 Length=12211 Score = 129 bits (142), Expect = 6e-25 Identities = 291/435 (67%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 128589 GGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 128648 ||||| || | || || | || || || | ||||| | | ||| | |||||||| Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 128649 TGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 128708 || || || ||||| | ||| |||| ||| || || || ||||| ||| || || | | Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 128709 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 128768 || | || ||||| | || || ||||| | ||| | | | || || || |||||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 128769 CGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAATA 128828 || || || ||||| || || ||||| || || || || ||||| || | || |||||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATA 12017 Query 128829 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGAATCATACCT 128888 || ||||| ||||||| | |||| ||||| ||||| || ||| Sbjct 12018 CAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTGCGCACGGATGCGACCA 12077 Query 128889 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAATTGACGC-AGCAGCTTC 128947 |||||||||||||| || || |||| | |||||| | |||| ||| || | | Sbjct 12078 GCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTG-CGCTTGCTGTGGC 12136 Query 128948 GTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACTGACGTGT 129007 || || |||| | ||| || || | ||| || | || || || ||||| || || || Sbjct 12137 ATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTGGCGGGT 12196 Query 129008 CGGAGTACGAACACC 129022 || ||||| ||||| Sbjct 12197 AGGCGTACGTACACC 12211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 126594 AATGTACTGTGTGCCCTTCAAATGAAGCTGTTCATCACGAGCAATGAACTTCATGATTTT 126653 ||| | |||||| || | ||| ||| |||||||||||| || ||||| || ||||| Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 126654 AGCATTACCTTCCATGATTTCCATATTTTTATGGAAGTTGAAGGTACATGCAAAACTAAC 126713 ||||||||||||||| | ||| | || | || || | ||| |||||||| || Sbjct 9767 AGCATTACCTTCCATTAATTC---ACGTTCAGCAAAAGCAAACGAACAGGCAAAACTCAC 9823 Query 126714 ATAGAAACGAATAGCTTCTAATGCGTT 126740 ||| || |||| |||||||||||| || Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATT 9850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531698853912600