Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq54669 192 7e-44 >seq54669 Length=12211 Score = 192 bits (212), Expect = 7e-44 Identities = 312/447 (70%), Gaps = 9/447 (2%) Strand=Plus/Minus Query 18328 GGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCT---GTGTTAAGATTGAAGTCGGTGAC 18384 || || || || || |||||||| || |||| |||| ||| ||| || ||| Sbjct 12211 GGTGTACGTACGCCTACCCGCCAATTT---AGCTCTTGTGTATTGATAGAATGTGGGGAC 12155 Query 18385 AGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATTATATTAGTAAACGCGCT 18444 || | || || || || | |||| |||| || |||| ||| || | ||||| Sbjct 12154 AGTTTGGATTCTATCAATGCCACAGCAAGCGCAATCATAAAATATGTTTCGCAGCGCGCG 12095 Query 18445 GGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTCAAGTTCGCTCTGGTGAA 18504 || || |||||||| |||||||| || |||||| |||| ||| | |||| ||||||| Sbjct 12094 GGGATTGGTATTAATGCTGGTCGCATCCGTGCGCAAGGTAGTGGAATTCGTCATGGTGAA 12035 Query 18505 GTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTAAATCGTGT 18564 | || || ||| |||||| || | ||||| || |||||||| || ||||| ||| Sbjct 12034 GCTTTTCATACCGGTTGTATTCCGTTTTATAAACACTTTCAGACTGCGGTAAAATCTTGT 11975 Query 18565 TCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATCCTATGTGGCATCTTGAA 18624 || ||||| ||||| ||||||||||| ||||| | | || ||| |||||||| | || Sbjct 11974 TCTCAAGGAGGTGTGCGTGGTGGTGCAGCAACGTTATTTTTTCCCCTGTGGCATTTAGAG 11915 Query 18625 TTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATGAAAACCGCATTCGTCAG 18684 | ||||| ||| | || | ||||||||| |||||||| || || || |||| || Sbjct 11914 ATAGAAAATCTGTTGGTATTAAAAAATAACCGTGGTGTTGAAGATAATCGTGTTCGCCAT 11855 Query 18685 CTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAACGTTTGGTTGCCGATGATTAT 18744 | ||||| || ||||||| |||||| | |||| | ||||| || | || | Sbjct 11854 ATGGATTACGGGGTACAAATTAATAAATTTATGTATCAGCGTTTAGTAAAAAACGAAGAG 11795 Query 18745 GTAACTCTGTTCAGTCCA---GACGTT 18768 ||||||| || |||||| |||||| Sbjct 11794 ATAACTCTATTTAGTCCATCTGACGTT 11768 Score = 123 bits (136), Expect = 3e-23 Identities = 507/785 (65%), Gaps = 31/785 (4%) Strand=Plus/Minus Query 20021 TAATCACTTAATGCAACCTATGTTTTTCGGTGA-----TGAACCTGGTATTGCGCGTTAC 20075 ||| || ||||| |||| |||||||| ||| | | ||| || | ||| || Sbjct 10421 TAACCAATTAATTGAACCGATGTTTTTTGGTCAGCCAGTAAAC---GTCTCACGCTTT-- 10367 Query 20076 GATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGG 20135 ||| || |||||| ||||| ||||| || |||||||| ||| | || || ||| Sbjct 10366 GATCAGCAAAAACATATCATGTTTGAAAAATTGATTGAAAAACAGCTTTCCTTTTTTTGG 10307 Query 20136 CGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACAT 20195 || || |||||| |||| || | ||||||| ||||| |||| | |||||| || ||| Sbjct 10306 CGGCCGGAAGAGATTGATGTTGCACGTGATAGAATCGACTATGCTGCTTTACCTGAGCAT 10247 Query 20196 GAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGA 20255 |||||| |||| |||| | ||||| || ||||| | | | | ||| | | |||||| Sbjct 10246 GAAAAAAATATTTTTATTAGTAATTTAAAATATCAAACCCTGTTAGATTCAATCCAGGGA 10187 Query 20256 CGTGCTCCTAACACTGCTTTTATGTCCATCG-TATCTGATGTAACACTTGACACATGGAT 20314 || ||||||| |||||| || |||| | ||| | ||| || || ||| | Sbjct 10186 CGCAGCCCTAACATTGCTTT-ATTACCATTAATTTCTATTCCTGAACTGGAAACTTGGGT 10128 Query 20315 TCCTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAA 20374 |||||| | || | ||||| | || |||||||||||| || ||||| || || Sbjct 10127 GGAGACCTGGTCATTTTTTGAGACCTTACATTCTCGTTCTTATACGCATATTATTCGTAA 10068 Query 20375 CGTGTACGAAGATCCGTCCAAGATCTTTGACGAAATCGTTCTTGATTCTGCAATCATGAA 20434 | | | ||||| || | | ||||| || || || | || | |||| | || Sbjct 10067 TATTGTCAACGATCCTTCGGTGGTATTTGAGGATATTGTCACTAATCAAGAAATCTTAAA 10008 Query 20435 GCGTGCTGATGCTGTTACCCGCTATTACGACCAACTGATTAACGCGACCACTGATTATCA 20494 || || | | | || | || || || | |||||| | || ||| ||||| | Sbjct 10007 ACGGGCAAAGGATATTTCTGCTTACTATGATCTTCTGATT---GAGATGACTAATTATTA 9951 Query 20495 TCATTTCTGTAATAACTTTACAGCAGAGACGGAAGTTAATG--AAAATTATAAACGTTTG 20552 |||||| || | | | | | || | |||| | || || | ||| | Sbjct 9950 TCATTT-----ATTAGGAGAGGGTTGCCATCTAA-TAAATGGTAGAACGATTACCGTCAG 9897 Query 20553 ATGTTGCGAGATATTAAAAAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAA 20612 | | | | || | |||||| | |||||| | ||| || || || ||| | ||| Sbjct 9896 -TTTACCTACAT-TAAAAAAGCAGCTGTATTTATGTCTGATGAGTGTCAATGCATTAGAA 9839 Query 20613 GCAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATG 20672 || |||| || ||||| ||||| || | ||||| ||||| ||| | | |||| Sbjct 9838 GCTGTTCGCTTTTATGTGAGTTTTGCCTGTTCGTTTGCTTTTGCTGAACGTGAATTAATG 9779 Query 20673 GAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAACTGCA-CTTGAAAGG 20731 ||||| | |||||||||||| |||| || ||||||||| || || |||| || Sbjct 9778 GAAGGTAATGCTAAAATTATCAAGTTGATCGCTCGTGATGAAGCGCTACATCTTG-CCGG 9720 Query 20732 CACACAATATATGCTGCGTATTTG--GCAGCAAGGTAAAGATGATCCTGAAATGATCGAA 20789 ||||| |||| | |||||| || || || |||||| |||||| | ||| Sbjct 9719 AACACAGCATAT--TTTATATTTGATGCGTTCCGGCAATGATGATTTAGAAATGGTAGAA 9662 Query 20790 ATTGC 20794 ||||| Sbjct 9661 ATTGC 9657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582325571751000