Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq54669 149 6e-31 seq11509 95.1 1e-14 >seq54669 Length=12211 Score = 149 bits (164), Expect = 6e-31 Identities = 289/420 (69%), Gaps = 14/420 (3%) Strand=Plus/Plus Query 140143 TCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATTTGAACACCATAATCTAGGTGG 140202 |||||||| | | ||| | | ||| | | |||||||| || || ||||| | ||| Sbjct 11799 TCGTTTTTTACTAAACGCTGATACATAAATTTATTAATTTGTACCCCGTAATCCATATGG 11858 Query 140203 CGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGTACGAGCAGGTTTTCTACTTCA 140262 |||| ||| || || |||||||| || || || | ||| | ||| ||||||| || Sbjct 11859 CGAACACGATTATCTTCAACACCACGGTTATTTTTTAATACCAACAGATTTTCTATCTCT 11918 Query 140263 AGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCGCGAATGCCGCCTTGAGAACAA 140322 | |||||| | ||| | | || || ||||| ||||| || | || |||||||||||| Sbjct 11919 AAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCACGCACACCTCCTTGAGAACAA 11978 Query 140323 GATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGAATAACGCCTGTATGACGAACT 140379 ||||| || | || || ||||| ||| | || |||||| || |||||| | || Sbjct 11979 GATTTTACCGCAGTCTGAAAGTG---TTTATAAAACGGAATACAACCGGTATGAAAAGCT 12035 Query 140380 TCACCAGCGCCAATCTTAGAACCTTCAGCAC-GATACATTCCAGCGTTAACACCAATACC 140438 |||||| | ||| | ||||| |||| ||| | ||||| |||| |||||| || Sbjct 12036 TCACCATGACGAATTCCACTACCTTGCGCACGGATGC-GACCAGCATTAATACCAATCCC 12094 Query 140439 GGCACGTTTGCTGATATATTTGATGATTGCTTTGTTTACT---GCATTAATACTGTCAAG 140495 || || | | |||||| |||||||| | || || ||||| ||| || | Sbjct 12095 CGCGCGCTGCGAAACATATTTTATGATTGC---GCTTGCTGTGGCATTGATAGAATCCAA 12151 Query 140496 ACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGGCGAGTCGGAGTACGTACACC 140555 ||| || || | ||| || | || ||||| || || ||||| || || ||||||||||| Sbjct 12152 ACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTGGCGGGTAGGCGTACGTACACC 12211 >seq11509 Length=51200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 67173 TAAT-TTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCT 67231 |||| |||||||||| | ||||||| ||||||| |||| | ||||||||||||| |||| Sbjct 32009 TAATATTGGTGGCCCCTGCTGGATTCGAACCAGCGACCCAGCGATTATGAGTCGCTTGCT 31950 Query 67232 CTATCCATCTGAGCTAAAGGGCCT 67255 ||| ||| ||||||||| |||||| Sbjct 31949 CTAACCAACTGAGCTAAGGGGCCT 31926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518229946918200