Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq54669 152 5e-32 seq13760 91.5 2e-13 >seq54669 Length=12211 Score = 152 bits (168), Expect = 5e-32 Identities = 238/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 43508 GGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAGATCATTCAGT 43567 ||||| || | ||| || | ||||| ||| | ||||| | ||| | | ||| | | Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 43568 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 43627 || || || ||||||||||| |||| || || ||||| ||||| ||||||||| || Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 43628 ACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 43687 || | |||||||| | || |||||||| | ||| || | || || || || ||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 43688 CGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 43747 || | || ||||| || || ||||| || ||||||||||| ||||| |||| |||||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATA 12017 Query 43748 ACACCAGTATGGCGTACTTCACCCATG-CCAATCTTAGAACCTTCGGCACGAATCATACC 43806 ||| ||||| ||||| ||||| | ||| | ||||| ||||| || ||| Sbjct 12018 CAACCGGTATGAAAAGCTTCA-CCATGACGAATTCCACTACCTTGCGCACGGATGCGACC 12076 Query 43807 AACGTTAATACCAATTCCAGCACGTTTGGAGATATATT 43844 | | ||||||||||| || || || | || | ||||| Sbjct 12077 AGCATTAATACCAATCCCCGCGCGCTGCGAAACATATT 12114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 40887 AATATATTGTGTACCTTTAAGATGAAGCTGCTCATCACGTGCAATGAACTTCATAATCTT 40946 ||||| ||||| || |||||| ||| |||||||| || || ||||| ||||| || Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 40947 GGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCGAAAGATAC 41006 |||||||||||||| | || || |||| | || ||| | ||| || ||| || Sbjct 9767 AGCATTACCTTCCATTAATT-CACGTTC--AGCAAAAGCAAACGAACAGGCAAAACTCAC 9823 Query 41007 ATAAAAACGAATAGCTTCCAATGCGTTGA 41035 |||||| |||| |||||| ||||| |||| Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATTGA 9852 >seq13760 Length=57140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 140750 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATACCA 140809 ||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||||| ||| Sbjct 18360 TTGGAGCGGGCAATGGGAATCGAACCCACATCATCAGCTTGGAAGGCTGAGGTAATGCCA 18301 Query 140810 TTATACGATATCCGC 140824 |||||| || |||| Sbjct 18300 TTATACCATGCCCGC 18286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534848633919600