Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq54669 141 1e-28 seq11509 93.3 5e-14 >seq54669 Length=12211 Score = 141 bits (156), Expect = 1e-28 Identities = 299/441 (68%), Gaps = 14/441 (3%) Strand=Plus/Plus Query 145195 GGACTAAAAAGAGTAATGTAATCGTTTTTAATCAGACGTTCAATCATCAAATCATTGATT 145254 |||||||| ||||| || | |||||||| | | ||| | | ||| || | ||| ||| Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 145255 TGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTTGTTGTTTTTAAGG 145314 || | || ||||| | ||| | | ||||| ||||| || || ||| ||||| | Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 145315 ACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGTTGCCGCACCACCA 145374 || || ||||||||| || | ||||||| || || |||| ||||| ||||||||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 145375 CGAATTCCACCTTGAGAACAACTTTTAACAGAAGCC---AAGTGAGTTTTCCAGAATGGA 145431 || | || |||||||||||| ||| || | || | ||||| ||| | || ||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTG---TTTATAAAACGGA 12014 Query 145432 ATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAGCGC-GATACAT 145490 ||| ||| ||||| ||||||| |||| ||| | ||||| || | ||| | Sbjct 12015 ATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTGCGCACGGATGC-G 12073 Query 145491 TCCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAATGCTTTCGTTCAC 145550 || || |||| |||||| || ||||| | | ||||| | ||| || || | | Sbjct 12074 ACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATT---TTATGATTGCGCTTGC 12130 Query 145551 TTTG---TTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACATGAACTGAATTG 145607 | || || || |||| | || |||| ||| || | |||||| || || ||||| Sbjct 12131 TGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTG 12190 Query 145608 ACGAGTTGGTGTACGTACACC 145628 || || || ||||||||||| Sbjct 12191 GCGGGTAGGCGTACGTACACC 12211 >seq11509 Length=51200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 75474 TTGGTGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCTA-- 75531 |||||| ||| ||| |||||||||||||||||| ||| ||||||||| || ||||||| Sbjct 32004 TTGGTGGCCCCTGCTGGATTCGAACCAGCGACCCAGCGATTATGAGTCGCTTGCTCTAAC 31945 Query 75532 CCTCTGAGCTAAAGGGCCTTAGTAAATTTGGT 75563 | ||||||||| ||||| |||| || ||||| Sbjct 31944 CAACTGAGCTAAGGGGCC-TAGTGAACTTGGT 31914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544403499565200