Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq54669 224 1e-53 >seq54669 Length=12211 Score = 224 bits (248), Expect = 1e-53 Identities = 319/446 (72%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 77123 AACGTCAG---GGCTGAACAGTGTGATGTAATCGTTATTGATTAAACGCTTATACATCAA 77179 |||||||| | || || || || || | ||||| || | |||||||| |||||| || Sbjct 11768 AACGTCAGATGGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAA 11827 Query 77180 ATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTT 77239 | |||| || || || ||||||| || |||| ||| |||| |||||||| ||| Sbjct 11828 TTTATTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTT 11887 Query 77240 GTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGC 77299 ||||| | |||| ||| ||||| | || |||||||| | ||| || | |||||||| Sbjct 11888 ATTTTTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGC 11947 Query 77300 AGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCA 77359 ||||||||||| || || ||||| ||||| ||||| ||||| ||||||| ||||| | Sbjct 11948 TGCACCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATA 12007 Query 77360 GAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCG-- 77417 ||||| || || ||||| | ||||||||| ||| ||| | ||| ||||| Sbjct 12008 AAACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACC--TTGCGCA 12065 Query 77418 CGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGCA 77477 || ||| | |||||||||| ||| || |||||||| || |||| ||| || | ||| || Sbjct 12066 CGGATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCG 12125 Query 77478 GAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAA 77537 | | ||||| | |||| ||| || || |||| |||| ||| ||| | | Sbjct 12126 CTTGCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTA 12185 Query 77538 AACTGACGCGTAGGAGTACGCACACC 77563 || || || ||||| ||||| ||||| Sbjct 12186 AATTGGCGGGTAGGCGTACGTACACC 12211 Score = 102 bits (112), Expect = 9e-17 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 75525 TTACGCTGAATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTCG 75584 ||||| ||||||||||||| ||| || | || ||| || | ||| || || Sbjct 10068 TTACGAATAATATGCGTATAAGAACGAGAATGTAAGGTCTCAAAAAATGACCAGGTCTCC 10127 Query 75585 ATCCACGTTTCCATTGAAACATCAGAGGCAATCGGGAGAAACGCCAGGTTAGGGCCGCGT 75644 | ||| ||||||| | | | ||| | || | || || | |||||||| |||| Sbjct 10128 ACCCAAGTTTCCAGTTCAGGAATAGAAATTAATGGTAATAAAGCAATGTTAGGGCTGCGT 10187 Query 75645 CCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTCG 75704 ||||| || | |||||||||||||||||||| | ||| | |||||| ||||||| Sbjct 10188 CCCTGGATTGAATCTAACAGGGTTTGATATTTTAAATTACTAATAAAAATATTTTTTTCA 10247 Query 75705 TGTTCCGGCATTTTTGCATACTGCATACGGTCTATC----GACAGATCCACTTCTTCCGG 75760 || || || | ||||| | || |||||| | | ||| | |||||||| Sbjct 10248 TGCTCAGGTAAAGCAGCATAGTCGAT----TCTATCACGTGCAACATCAATCTCTTCCGG 10303 Query 75761 TCGCCAGAAGAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCGATGTTTTTG 75817 ||||| || || || || ||||||||| |||| |||| || | | ||||||||| Sbjct 10304 CCGCCAAAAAAAGGAAAGCTGTTTTTCAATCAATTTTTCAAACATGATATGTTTTTG 10360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568073216937600