Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq55013 176 1e-39 >seq55013 Length=475 Score = 176 bits (194), Expect = 1e-39 Identities = 255/357 (71%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 6110 CCTTCTCGACGATCCGTTGCGCTTCGTCTTCGTCAAAGATGCCGGTGTAGCCAAAGGCGA 6169 |||||| | ||| || | ||||||||| |||| | || || | | ||||| || | Sbjct 412 CCTTCT--ATGATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCA 355 Query 6170 GTCGGGCGCACTGGATCATGGCTTTGTGGCGCAGCATCCGCTTCGGATGGCTCTGCCAGG 6229 ||||| || || ||||||||||| ||||| | ||| ||||| ||||| || ||||| | Sbjct 354 AGCGGGCACATTGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATG 295 Query 6230 GCTGGGTGTTGCGCTTGCAC--TCGGCCATCCATTCGGTGACCTTGATTGGGTGATTGCG 6287 | | ||| | || | || || | ||| |||| ||||| | | | || |||| ||| Sbjct 294 G--GCCTGTAGGGCGTCGACATTCCGTCATGAATTCAGTGACTTCGGTAGGATGATGGCG 237 Query 6288 GTCCTTGCGATAGATGATGCAGGTGCATGACTCGTCGTCCTGCTGGAAGTCCATCCCATC 6347 ||| || || ||||| ||||||||| | || ||||| ||||| || ||| ||||| Sbjct 236 GTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGCTGAAACGTCATGCCATC 177 Query 6348 GAACGCGCCATTTTCATTAATGATCCGCGACCATCCGTCCACGCCTACGACCGGCACGAT 6407 || | ||||| |||||||| || ||||| || || | ||| |||||||||||||| Sbjct 176 AAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATGCCAACGACCGGCACGAT 117 Query 6408 GCCTCCCTTATCCGGGAAGGCATAGATCTCCTTCGTCCAGGGGTTCAGGCCGTACTG 6464 | || ||||| || || || || || ||||| || |||| || ||||| || || Sbjct 116 GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAGGGATTGAGGCCATATTG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155505482102920