Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq55013 172 2e-38 seq22457 143 1e-29 seq36628 114 5e-21 seq39681 111 6e-20 seq55168 102 3e-17 seq54883 93.3 2e-14 >seq55013 Length=475 Score = 172 bits (190), Expect = 2e-38 Identities = 270/394 (69%), Gaps = 33/394 (8%) Strand=Plus/Minus Query 2706 ATGCGTTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACGGGCACAC 2765 || || || ||||| || |||||| || || ||||| || || |||| |||||||| Sbjct 403 ATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCAAGCGGGCACAT 344 Query 2766 TGAATCATCGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGCCCCGTGATT 2825 |||||||| |||||||| |||||||| || || ||||| ||||| || || || Sbjct 343 TGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATGGGCCTGTA--- 287 Query 2826 TCTCTGCCTTCGCGGGTTTTGAATGGTGCGCGGCGACATTCATCCATCCACTCGGTAACG 2885 | ||| |||||||| ||| | || || || Sbjct 286 ---------------------------GGGCGTCGACATTCCGTCATGAATTCAGTGACT 254 Query 2886 CAGATCGGGTGATTACGGTCTTTGCGGTAAATCCGACATGTACAGGATTCATCGTCCTGC 2945 | | || |||| |||||||| ||||| || || || || |||| | |||||| ||| Sbjct 253 TCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGC 194 Query 2946 TCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATAATGCGGGACCAGCCATCAACG 3005 | ||| |||||||||||| || | ||||||||| || ||||| ||||| ||||||| | Sbjct 193 TGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATG 134 Query 3006 CCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCAT 3065 || || ||||| ||||| ||| ||||| || || ||||||||||| || || | Sbjct 133 CCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAG 77 Query 3066 GGATTAAGGCCGTACTGGTTGGCAACGATCAGCA 3099 ||||| ||||| || || ||||||| || |||| Sbjct 76 GGATTGAGGCCATATTGACTGGCAACAATTAGCA 43 >seq22457 Length=815 Score = 143 bits (158), Expect = 1e-29 Identities = 211/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 17098 AATATACCTGTGGTGACTACAGAGCTTCTTGCCAGCTTATATGGCACAGAACCAGATTAC 17157 ||||| || || |||| |||||| | ||||| || |||||||| | | | | Sbjct 637 AATATTCCAGTAATGACAACAGAGTTGCTTGCTGAATTGTATGGCACGGTAATTAAAAAT 578 Query 17158 ATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTTA 17217 |||| || |||||| ||| ||| | | || ||||| | |||||||| | || | Sbjct 577 ATCCACAATAATTTCTCTCGTAATGCGGATCGGTTTGTCGTTGGTAAGCATCATTTCAAA 518 Query 17218 CTTGAGAATGAGGAGTTGCGCGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGTGAAA 17277 || || ||| || |||| |||||||||| || ||| |||| ||||||||| Sbjct 517 CTAGAAGGTGAAGAACTGCGTGAATTTAAGCGCAAACCCTCTAAAAGAGGGTCTGTGAAA 458 Query 17278 ATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCA 17337 || | ||| |||| || || |||| ||||| |||||||| ||||| ||||| || Sbjct 457 ATAACTGATAATGTTCATTCGCTTTTCCTGTGGACTGAACGCGGCGCAGCACGTCATGCC 398 Query 17338 AAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTT 17396 |||||||| ||||| ||||| ||||||||||| || ||||| | || || || ||||| Sbjct 397 AAAATGCTAGAAACCGATCAAGCATGGGAAGTATTTGAAAAGTTAGAGGATTGTTATTT 339 Score = 116 bits (128), Expect = 1e-21 Identities = 86/98 (88%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 60454 CCAGTTAGTAGCTGGTTGGTCGGGTGTCAACTG-AGCCTTACAAGAAGCTCTGGGCATAT 60512 ||||| |||||||||| | ||||||||||||| |||| | |||| |||| |||||||| Sbjct 719 CCAGTCAGTAGCTGGT--GCCGGGTGTCAACTGGAGCCACAAAAGATGCTCCGGGCATAT 776 Query 60513 TCCCCTTACGGGTATTGTATTACGCCTCTCCACCCGAC 60550 ||||||| ||||| |||||||||||||||||||||||| Sbjct 777 TCCCCTTGCGGGTCTTGTATTACGCCTCTCCACCCGAC 814 >seq36628 Length=791 Score = 114 bits (126), Expect = 5e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 17298 CCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 17357 ||| || |||||||||||||| || ||||| |||||| | |||||||| ||||| |||| Sbjct 577 CCTTATTCTCTGGACAGAACGAGGCGCAGCACGTCACACCAAAATGCTAGAAACCAATCA 518 Query 17358 GGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCA 17398 ||||||||||||||||||||| | ||||| || ||||||| Sbjct 517 GGCATGGGAAGTGTTCGAAAAGTTAGAAGATTGTTATTTCA 477 >seq39681 Length=3370 Score = 111 bits (122), Expect = 6e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 17298 CCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 17357 ||| || |||| ||||||||| || ||||| |||||||| |||||||| ||||| ||||| Sbjct 54 CCTTATTCTCTAGACAGAACGAGGCGCAGCACGTCACGCCAAAATGCTAGAAACCGATCA 113 Query 17358 GGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCA 17398 ||||||||||| |||||||| | ||||| || ||||||| Sbjct 114 AGCATGGGAAGTATTCGAAAAGTTAGAAGATTGTTATTTCA 154 >seq55168 Length=2163 Score = 102 bits (112), Expect = 3e-17 Identities = 371/565 (66%), Gaps = 33/565 (6%) Strand=Plus/Plus Query 16847 CAGGTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAGACATGCGGttttt 16906 |||||||| || ||||||| |||||||||| |||||||||||| || ||||||||||| Sbjct 1528 CAGGTGCTGAACACACCTT--CAAGTAGCGGATACCGCGCCCGAAAGTAATGCGGTTTTT 1585 Query 16907 ttGTGTCCAGTCTTCTTGGTTTATGACCGGG---CGTGCGGCTAATACAATACCAGCAAT 16963 || |||| | || ||||| |||| || || | | ||||||||| || Sbjct 1586 TTACATCCATAGAT--TG--TTATGGTCGGGTAGCGAGCAGGGA-TACAATACCCAAAAG 1640 Query 16964 GGGAATA-TGCCCGCCGACTACTTGCGGTTTTGA-GCGCCCGGTCACCCTCTCAA-AAGG 17020 ||||| | ||| ||| ||||||| ||| || | | |||| | || | || || | Sbjct 1641 GGGAAAACTGCTGGCCTTCTACTTGAGGTGTTCAAGTACCCGACCTCCATTAAAATAATG 1700 Query 17021 GGTAAATCAAAATATCAAGTAGGACACAAAGCATGAAAAC-CATCTCCGTG--GAGTCCC 17077 | ||||| || ||||||||||| || |||| | || | | | || | Sbjct 1701 GATAAATTGAACAATCAAGTAGGAATGTAAAAATGACTATGCAGCGCTATATCGAAAAAC 1760 Query 17078 TCTCCATAATTTCATTTAGTAATATACCTGTGGTGACTACAGAGCTTCTTGCCAGCTTAT 17137 | || | ||| | || || || || || | || || ||| | | || | | | Sbjct 1761 TTTCTGTCATTACGCATAATAGAATTCCGGTAATCACCACTGAGTTGTTAGCTAAACTGT 1820 Query 17138 ATGGCACAGAACCAGATTACATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTA 17197 |||| |||||||| | | || || ||||| ||||| ||| | | | || || Sbjct 1821 ATGGTACAGAACCTGCTCGTATTCGCAAAAACCATAATCGCAATACAGATAGGTTCATTG 1880 Query 17198 TCGGTAAGCACTACTTTTTACTTGAGAATGAGGAGTTGCGCG----AATTTAAGCACAGC 17253 | ||| ||||| ||||| || | ||| | ||| ||||| | || Sbjct 1881 AGGATAAACACTA--TTTTAA---AGTAGTAGGCGAGGCGGTTAATAATTTGCG---AG- 1931 Query 17254 ATGTCTTTAAGACCTTCTGTGAAAATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACA 17313 |||||||||||| || | |||| ||| || ||||| || || || ||||| Sbjct 1932 -TGTCTTTAAGACATT---TACAAATTTCCCACAAAACACGCTCACTTATTCTGTGGACC 1987 Query 17314 GAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTC 17373 | ||| | ||||| || || || |||||||| ||||| ||||| || |||||||||||| Sbjct 1988 GGACGTGAGGCAGCACGCCATGCCAAAATGCTAGAAACCGATCAAGCTTGGGAAGTGTTC 2047 Query 17374 GAAAAACTGGAAGACTGCTATTTCA 17398 ||||| | ||||| || ||||||| Sbjct 2048 GAAAAGTTAGAAGATTGTTATTTCA 2072 >seq54883 Length=869 Score = 93.3 bits (102), Expect = 2e-14 Identities = 85/103 (83%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 60451 CAACCAGTT--AGTAGCTGGTTGGTCGGGTGTCAACT-GAGCCTTACAAGAAGCTCTGGG 60507 |||||||| |||| |||| | |||||||||||| |||| | | || |||| ||| Sbjct 769 CAACCAGTGTCAGTAACTGGC--GCCGGGTGTCAACTAGAGCACCATA-GACGCTCCGGG 825 Query 60508 CATATTCCCCTTACGGGTATTGTATTACGCCTCTCCACCCGAC 60550 |||||||||||| ||||| |||||||||||||||||||||||| Sbjct 826 CATATTCCCCTTGCGGGTCTTGTATTACGCCTCTCCACCCGAC 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194548141290930