Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11840 248 1e-60 seq3673 107 3e-18 seq4930 96.9 5e-15 seq12913 93.3 6e-14 >seq11840 Length=1854 Score = 248 bits (274), Expect = 1e-60 Identities = 476/694 (69%), Gaps = 16/694 (2%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | |||| ||| | || |||||||| || || || || | || Sbjct 729 TGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATCGAC 788 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 |||||||| || || || || || |||||||| || ||||| || |||| | | |||| Sbjct 789 TCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGACTA 848 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | |||| | | ||| || || || || | ||||| ||| || || | Sbjct 849 TTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCAGTT 908 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATAT 77366 || ||||| | ||||||||| ||||| || ||| | || || | |||| Sbjct 909 GGCGTTCGGTCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCATAT 968 Query 77367 GTTTCATAAGGT-CCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATA 77425 || ||||||||| || || ||| ||| | ||||||||| || ||||| || |||||||| Sbjct 969 GTCTCATAAGGTCCCAACTCTTT-AGCCAATTCACAACTGGCCTCCAAAGCGCCGTAATA 1027 Query 77426 AATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATG 77485 || || || ||||||| |||| || || ||||| ||| ||||| || | | | Sbjct 1028 TATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAAGGGCTGACG 1087 Query 77486 TAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 77545 | ||||||||| || || || ||||||||||||||||| || |||| |||||||| Sbjct 1088 CATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCTCTT 1147 Query 77546 ATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||| || | | ||| || | |||||| || |||| ||| || |||||||||||||| Sbjct 1148 ATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAGATT 1207 Query 77606 TCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC-----AAATCTTCCATCT 77660 ||| | |||||| |||| || || ||||| |||||| | | || || | | Sbjct 1208 TCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAGCTCCCTTTT 1267 Query 77661 -ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTT 77719 | || || |||||||| || || || | ||| || ||||| | ||||| | || Sbjct 1268 GTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTCAT---CTTT 1324 Query 77720 G---GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | | || | ||||| || || |||| || || || || || |||| |||||| Sbjct 1325 GGACGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCCAAATTTTG 1384 Query 77777 TTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATA 77809 ||| || |||| |||||| ||| || ||||| Sbjct 1385 TTGATTTGACTTTCGATTGCAGTGA-TCTTTATA 1417 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 76766 TTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTA 76825 |||| ||||||| | || |||||||| | | || || |||||||| | | || || Sbjct 316 TTTAGTCTTATCGACAGTGAACTGAATAGCATTAGCGGCCGGTTTTGTTCTCAAGTAATA 375 Query 76826 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATA 76885 ||| || || || ||||| | ||||||| |||||||||| || | || | | Sbjct 376 CATTCCTGTCTTAAGACCTAATTTCCATCCAAAGAAATGCATTGAAGTAATCTTAGCC-A 434 Query 76886 ACTA-GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTAT 76944 | | || || || || |||| ||| | |||||||| || || || || ||||| | Sbjct 435 TCGATGGCTCTGCGATGTGAACATTAAGAGACTGACTCTGGTCTATATAACAGCCTCTGT 494 Query 76945 CAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994 |||||||||| | | || |||| || | || ||||||| ||||||| Sbjct 495 CAGCCGCCATCTCCAGTATCTTCTTCTGTGATATCTCCCAAACAGTTTTG 544 >seq3673 Length=14246 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||| ||| || || || || |||||| ||| ||||||||||| || || ||| ||||| Sbjct 13811 CCAGATTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATAA 13752 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | |||||| | | ||| | ||||||||| |||| ||| || | ||||| | Sbjct 13751 AGTGTTTTTCTCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTACCT 13692 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 |||| ||||||| || || ||||| ||| | |||||||| | ||| || || |||| | Sbjct 13691 CTTCTACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTCTGTGTACT 13632 Query 48703 GGATTGGGAAAATAACAAA 48721 ||||| || | ||||| Sbjct 13631 CAATTGGAAACACCACAAA 13613 >seq4930 Length=2674 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 78423 GATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATG 78482 || || || || ||||| ||||| | || || |||||||| || || | || ||| Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 78483 TCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTC 78542 ||| ||||| || || | || | ||||| |||||| ||||||| ||| || | Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 78543 TTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 78601 || || ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638 |||||| ||||| || ||||| || |||| |||||| Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGT 216 >seq12913 Length=27019 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 47819 ATGATTATCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAA 47878 ||||| |||| | | |||||| || |||| ||||| ||||| || |||||||| || Sbjct 26882 ATGATCCTCTTTGTTGGCCATAACACCACTTTTCTGATACTCACCGACCCGTTTCTCAAA 26941 Query 47879 AAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||||| || || ||||||||||| || | |||||| |||||||| ||||| Sbjct 26942 GAAATTGGTCTTTCCTTCCAATGAAATTTGTTCCATGAAATCAAACGGATT 26992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694179536080800