Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11840 223 5e-53 seq4930 114 2e-20 seq3673 105 1e-17 seq12913 93.3 6e-14 >seq11840 Length=1854 Score = 223 bits (246), Expect = 5e-53 Identities = 450/665 (68%), Gaps = 12/665 (2%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| ||||| || | |||| || | || |||||||| || || || || | || Sbjct 729 TGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATCGAC 788 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| || || || || || || ||||| |||||||| || |||| | | |||| Sbjct 789 TCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGACTA 848 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | | |||| | | ||| || || || || | ||||| ||| || || | | Sbjct 849 TTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCAGTT 908 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 || ||||| | ||||||||| ||||| || || | || || | |||| Sbjct 909 GGCGTTCGGTCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCATAT 968 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 || || |||| || || || ||| | ||| ||||| ||||| || || |||||||| Sbjct 969 GTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAATAT 1028 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081 || || || ||||||| ||||||| || |||||| |||| ||||| || | | | Sbjct 1029 ATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAAGGGCTGACGC 1088 Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | ||||||||| || || | ||||||||||||||||| || |||| ||||||||| Sbjct 1089 ATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCTCTTA 1148 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || || || | ||| || | ||| || || |||| || || ||||||||||||||| Sbjct 1149 TTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAGATTT 1208 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCCATCT-- 76255 || | |||||| |||| || || ||||| |||||| || ||| | | Sbjct 1209 CTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAGCTCCCTTTTG 1268 Query 76256 ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 | || || ||| | ||| || || || | ||| || || || | ||||| | ||| Sbjct 1269 TTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTCAT---CTTTG 1325 Query 76316 ---GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 | || | ||||| || ||||||| || ||||| || ||||| | ||||||| Sbjct 1326 GACGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCCAAATTTTGT 1385 Query 76373 TGGTT 76377 || || Sbjct 1386 TGATT 1390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/323 (67%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC-----GA-CTCTAGCT 76468 ||| |||| ||||| ||||||| || | ||||| | ||||| || | ||| || Sbjct 1483 GGATTTCCTGTTTCGATCTGTGCCTCCACTATAGAATACCAGAGTTGTTGAGCCCTAACT 1542 Query 76469 TTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 | | || || | || | | | || |||||||| | |||||| ||||||||||| Sbjct 1543 TGTCTTTTATACTTCTTTTGGTT------TTCATATTTTTCATATAATCGTTCAAATTCT 1596 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || |||||| || | | || ||||| || | |||||||||| ||||||| Sbjct 1597 TCGCCCCAACAGTCGTGAAGTCCGGGACACTCGTGTGGACACATCAGTGACCACATTTGG 1656 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 ||| ||| || || |||||| || || || ||||| || || ||| ||||||| | Sbjct 1657 TCTGCCTCTACGCGACGCATAAACAGGTCCGGAATCCAAAGGCCATAAAACAGATCTCTG 1716 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | ||| | ||||| ||| || || || | | ||||| ||||| | | || | Sbjct 1717 GCTCTTAGCTCTTCTGATCCGGTGTTTTTCCTTAAATCTAAGAACTGGAACACGTCTGCG 1776 Query 76709 TGCCATGGTTCTAGATATATCGC 76731 ||||| || || || ||||| || Sbjct 1777 TGCCACGGCTCCAGGTATATGGC 1799 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 75361 TTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTA 75420 |||| ||||||| | ||||||||||| | | | || |||||||| | | || || Sbjct 316 TTTAGTCTTATCGACAGTGAACTGAATAGCATTAGCGGCCGGTTTTGTTCTCAAGTAATA 375 Query 75421 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTA-GTTTGGAAT 75479 ||| || || || ||||| | ||||||| |||||||||| || | || | || Sbjct 376 CATTCCTGTCTTAAGACCTAATTTCCATCCAAAGAAATGCATTGAAGTAATCTTAGCCAT 435 Query 75480 AACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTAT 75539 | || || || || |||| ||| | |||||||| || || || || ||||| | Sbjct 436 CGAT-GGCTCTGCGATGTGAACATTAAGAGACTGACTCTGGTCTATATAACAGCCTCTGT 494 Query 75540 CAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 |||||||||| | | || |||| || | || ||||||| ||||||| Sbjct 495 CAGCCGCCATCTCCAGTATCTTCTTCTGTGATATCTCCCAAACAGTTTTG 544 >seq4930 Length=2674 Score = 114 bits (126), Expect = 2e-20 Identities = 308/462 (67%), Gaps = 8/462 (2%) Strand=Plus/Plus Query 77018 GATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA 77077 || || ||||||||||| ||||| | || || |||||||| || | || || || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 77078 TCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTC 77137 ||| ||||| || || | ||| | ||||| |||||| ||||||||||| ||| | Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 77138 TTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 77196 || || ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 77197 TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAA-CAA 77255 |||||| ||||| || ||||| || | || |||||| ||| || ||| || || Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 77256 TATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCCATTTTTAGGATTA-ACATA 77313 | | || |||| || || || || | | ||||| | | ||| ||| Sbjct 240 TTT--ATAGATCTGGTCGGAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCAT- 296 Query 77314 GTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGA 77373 | | | ||||||| || || || || ||||| || || ||||||||||| || Sbjct 297 TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTTGA 356 Query 77374 TACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGC 77433 || ||||||| || || || | || || || | |||| ||| || ||||| || Sbjct 357 GACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCCGC 416 Query 77434 TATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCC 77475 |||||| || || || ||| |||| | ||| || ||||| Sbjct 417 TATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCC 458 >seq3673 Length=14246 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| || || || || |||||| ||| |||||||||||||| || ||| |||||| Sbjct 13810 CAGATTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATAAA 13751 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | |||||| || ||| | ||||||||| |||| ||| || | ||||| || Sbjct 13750 GTGTTTTTCTCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTACCTC 13691 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 ||| |||||||||| || ||||| ||| | |||||||| | ||| || || Sbjct 13690 TTCTACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTC 13640 >seq12913 Length=27019 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 46308 ATGATTATCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAA 46367 ||||| |||| | | |||||| || |||| || || ||||| || |||||||| || Sbjct 26882 ATGATCCTCTTTGTTGGCCATAACACCACTTTTCTGATACTCACCGACCCGTTTCTCAAA 26941 Query 46368 AAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || ||||||||||| || | |||||| |||||||||||||| Sbjct 26942 GAAATTGGTCTTTCCTTCCAATGAAATTTGTTCCATGAAATCAAACGGATT 26992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712432271390400