Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq54669 188 7e-43 >seq54669 Length=12211 Score = 188 bits (208), Expect = 7e-43 Identities = 285/404 (71%), Gaps = 1/404 (0%) Strand=Plus/Plus Query 132553 TTTTTACCAAGACGTTCCATCATCAAATCATTGATTTGCAGACCATAATCTAGATGACGA 132612 ||||||| || ||| | ||| || | ||| ||||| | || ||||| | ||| ||| Sbjct 11803 TTTTTACTAA-ACGCTGATACATAAATTTATTAATTTGTACCCCGTAATCCATATGGCGA 11861 Query 132613 ATACGGTTTTCATCTACACCTTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGA 132672 | ||| || || || ||||| ||| || |||||||| | ||| ||||| | |||| | Sbjct 11862 ACACGATTATCTTCAACACCACGGTTATTTTTTAATACCAACAGATTTTCTATCTCTAAA 11921 Query 132673 TGCCACATTGGATAATAAAGAGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGAT 132732 ||||||| ||| || | | || |||||||||||||| ||||| ||||||||||||||| Sbjct 11922 TGCCACAGGGGAAAAAATAACGTTGCTGCACCACCACGCACACCTCCTTGAGAACAAGAT 11981 Query 132733 TTTACTGCAGTCTGAAAATGTTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCA 132792 ||||| ||||||||||| ||||| |||| ||||| || ||||| |||| ||| Sbjct 11982 TTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATACAACCGGTATGAAAAGCTTCACCA 12041 Query 132793 TTACCAATTTTTGAGCCTTCAGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGC 132852 | || |||| |||| || || || ||| || || || || || || || ||| Sbjct 12042 TGACGAATTCCACTACCTTGCGCACGGATGCGACCAGCATTAATACCAATCCCCGCGCGC 12101 Query 132853 TTGCTGATATACTTAATAATACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCA 132912 | | ||| || || || | | || ||||| ||||||| || || ||| Sbjct 12102 TGCGAAACATATTTTATGATTGCGCTTGCTGTGGCATTGATAGAATCCAAACTGTCCCCA 12161 Query 132913 GCTTCGATAACTACACAAGAACTAAATTGACGAGTAGGAGTACG 132956 ||| || | ||||||||| |||||||| || ||||| ||||| Sbjct 12162 CATTCTATCAATACACAAGAGCTAAATTGGCGGGTAGGCGTACG 12205 Score = 120 bits (132), Expect = 3e-22 Identities = 202/284 (71%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 130220 ATTACGCATAATGTGCGTGTAAGAACGAGAGTGAATCGTTTCAGAGAAAGTCCAAGTCTG 130279 |||||| ||||| ||||| ||||||||||| || | || ||| | || | ||| |||| Sbjct 10067 ATTACGAATAATATGCGTATAAGAACGAGAATGTAAGGTCTCAAAAAATGACCAGGTCTC 10126 Query 130280 GTTCCAAGTATCTAATGACGGATCAGAAATCAAAGC--AGAAAGAACTGCAGCAGGCGCT 130337 |||||| || | | ||| |||||| || | | |||| | || ||| ||| Sbjct 10127 CACCCAAGTTTCCAGTTCAGGAATAGAAATTAATGGTAATAAAGCAATGTT--AGG-GCT 10183 Query 130338 -CGTCCTTGAATACTGTCTAAAAGAGACTGATATTTCAAGTTGTTAATAAAAATAttttt 130396 ||||| || || ||||| || | |||||||| || || |||||||||||||||| Sbjct 10184 GCGTCCCTGGATTGAATCTAACAGGGTTTGATATTTTAAATTACTAATAAAAATATTTTT 10243 Query 130397 ttGATGCTCTGGGAGTTTATCAAATTGAGCTCTGTCA-GT-CATCAAGTTAACTTCTTCT 130454 || |||||| || | | || | | ||| ||| || || || | || ||||| Sbjct 10244 TTCATGCTCAGGTAAAGCAGCATAGTCGATTCTATCACGTGCAACA--TCAATCTCTTCC 10301 Query 130455 GGCCGCCAGAAAAATGAAAGCTGCTTTTCAATCAGTTCTTCAAA 130498 |||||||| ||||| |||||||| |||||||||| || |||||| Sbjct 10302 GGCCGCCAAAAAAAGGAAAGCTGTTTTTCAATCAATTTTTCAAA 10345 Score = 82.4 bits (90), Expect = 8e-11 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 129821 AATATATTGAGTACCCTTAAGATGTAGTTGTTCATCACGAGCGATGAACTTCATAATCTT 129880 ||||| || || || ||||||||| ||||||||||||||| ||||| ||||| || Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 129881 GGAGTTGCCTTCCATAATTTCCATATTCTTATGGAAGTTAAAGGTACAAGCAAAACTCAC 129940 | || |||||||| | || || ||| | || ||| | ||| ||||||||||| Sbjct 9767 AGCATTACCTTCCATTAATT-CACGTTC--AGCAAAAGCAAACGAACAGGCAAAACTCAC 9823 Query 129941 ATAAAAACGAATTGCTTCAAGACCATTGA 129969 |||||| |||| ||||| | |||||| Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATTGA 9852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511121357115600