Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq54669 161 1e-34 seq13760 95.1 1e-14 >seq54669 Length=12211 Score = 161 bits (178), Expect = 1e-34 Identities = 240/338 (71%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 140425 GGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAGATCATTCAGT 140484 ||||| || | ||| || | ||||| ||| | ||||| | ||| | | ||| | | Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 140485 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 140544 || || || ||||||||||| |||| || || ||||| ||||| ||||||||| || Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 140545 ACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140604 || | |||||||| | || |||||||| | ||| || | || || || || ||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 140605 CGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 140664 || | || ||||| || || ||||| || ||||||||||| ||||| |||| |||||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATA 12017 Query 140665 ACACCAGTATGACGTACTTCACCCATG-CCAATCTTAGAACCTTCGGCACGAATCATACC 140723 ||| |||||| ||||| ||||| | ||| | ||||| ||||| || ||| Sbjct 12018 CAACCGGTATGAAAAGCTTCA-CCATGACGAATTCCACTACCTTGCGCACGGATGCGACC 12076 Query 140724 AACGTTAATACCAATTCCAGCGCGTTTAGAGATATATT 140761 | | ||||||||||| || ||||| | || | ||||| Sbjct 12077 AGCATTAATACCAATCCCCGCGCGCTGCGAAACATATT 12114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 138390 AATATATTGTGTACCTTTAAGATGAAGCTGCTCATCACGTGCAATGAACTTCATAATCTT 138449 ||||| ||||| || |||||| ||| |||||||| || || ||||| ||||| || Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 138450 GGCATTACCTTCCATGATTTCCATATTCTTGTGGAAGTTAAAGGTACATGCAAAAGATAC 138509 |||||||||||||| | || || ||| | ||| ||| | ||| |||||| || Sbjct 9767 AGCATTACCTTCCATTAATT-CACGTTC-AGCAAAAG-CAAACGAACAGGCAAAACTCAC 9823 Query 138510 ATAAAAACGAATAGCTTCCAATGCGTTGA 138538 |||||| |||| |||||| ||||| |||| Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATTGA 9852 >seq13760 Length=57140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 71077 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATGCCA 71136 ||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||||||||| Sbjct 18360 TTGGAGCGGGCAATGGGAATCGAACCCACATCATCAGCTTGGAAGGCTGAGGTAATGCCA 18301 Query 71137 TTATACGATATCCGC 71151 |||||| || |||| Sbjct 18300 TTATACCATGCCCGC 18286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532725330442800