Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq54669 129 6e-25 >seq54669 Length=12211 Score = 129 bits (142), Expect = 6e-25 Identities = 289/434 (67%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 |||||||| ||||| || | || || || | ||||| | | ||| | |||||||| Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || || || ||||| | ||| |||| ||| || || || ||||| ||| || || | | Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || | || ||||| | || || ||||| | ||| | | | || || || |||||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 || || || ||||| || || ||||| || || || || |||||||| | || |||||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATA 12017 Query 141441 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCCT 141500 || ||||| ||||||| | |||| ||| | || || || || Sbjct 12018 CAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTGCGCACGGATGCGACCA 12077 Query 141501 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGATGCAGCAGCTTCG 141560 |||||||||||||| || || |||| | ||||| | |||| || | | Sbjct 12078 GCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCGCTTGCTGTGGCA 12137 Query 141561 TTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGTGTC 141620 || || |||| | ||| || |||| ||| || | || || || || || ||||| || Sbjct 12138 TTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTGGCGGGTA 12197 Query 141621 GGAGTACGAACACC 141634 || ||||| ||||| Sbjct 12198 GGCGTACGTACACC 12211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 139236 TTCATCACGAGCAATGAACTTCATGATTTTAGCATTACCTTCCATGATTTCCATATTTTT 139295 |||||||||||| || ||||| || |||||||||||||||||||| | ||| | || Sbjct 9737 TTCATCACGAGCGATCAACTTGATAATTTTAGCATTACCTTCCATTAATTC---ACGTTC 9793 Query 139296 ATGGAAGTTGAAGGTACATGCAAAACTAACATAGAAACGAATAGCTTCTAATGCGTT 139352 | || || | ||| |||||||| ||||| || |||| |||||||||||| || Sbjct 9794 AGCAAAAGCAAACGAACAGGCAAAACTCACATAAAAGCGAACAGCTTCTAATGCATT 9850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537963238718400