Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031128.1 Length=158081 Score E Sequences producing significant alignments: (Bits) Value seq54669 100 3e-16 seq4872 86.0 6e-12 >seq54669 Length=12211 Score = 100 bits (110), Expect = 3e-16 Identities = 258/385 (67%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 17255 TTAATCTGAATCCCATAGTCGATACGGCGTTCACGGTTCTCTTCCAATCCACGGTTGTTT 17314 ||||| || | ||| || || ||| |||| |||| || ||||| | |||||||| ||| Sbjct 11832 TTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTT 11891 Query 17315 TTGAGAACAACGACATCATCAAATTGATAATGCCAGATGGGAACATAGCATGTTGCCGAT 17374 || | || | | || || | | ||||||| | ||||| | | | ||||| | Sbjct 11892 TTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCA 11951 Query 17375 CCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTC--AAATACTTGATGA 17432 |||||||| | ||| |||||||| ||||| || | ||| ||| ||| || || | Sbjct 11952 CCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCA---GTCTGAAAGTGTTTATAA 12008 Query 17433 AT-GGAACCAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGC-CACG 17490 | |||| ||| ||||| | ||| || | ||| || ||||| ||| |||| Sbjct 12009 AACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCT-TGCGCACG 12067 Query 17491 AATTGCCCCAACATCGAATCCGATGCCAGCACGTTTGGAAACATAATCCACGAT-GCTTT 17549 || ||| ||| | || || || || || | |||||||| | | ||| || | Sbjct 12068 GATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCGCT 12127 Query 17550 TCGCAGTGGCATTAATTGAGTCCAATGTATCACCAGTTTTGATTAATACACAAGAGCTGA 17609 | || |||||||| || || ||||| | || ||| || || |||||||||||||| | Sbjct 12128 T-GCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAA 12186 Query 17610 ACTGTCGGGTCGGGGTGCGGACGCC 17634 | || ||||| || || || || || Sbjct 12187 ATTGGCGGGTAGGCGTACGTACACC 12211 >seq4872 Length=25388 Score = 86.0 bits (94), Expect = 6e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 102158 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 102217 ||||||||||| ||||||||||||| ||||||| ||||||||||| ||||| ||||| || Sbjct 1016 TGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGTCGCTGGTTCGAGTCCAGC 1075 Query 102218 CA 102219 || Sbjct 1076 CA 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505375007194200