Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq13154 149 2e-31 seq6017 84.2 6e-12 seq54220 80.6 7e-11 >seq13154 Length=83798 Score = 149 bits (164), Expect = 2e-31 Identities = 236/337 (70%), Gaps = 1/337 (0%) Strand=Plus/Plus Query 26638 CCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCC 26697 || || |||||||||||||| || || | |||| ||||| || ||| | |||||| Sbjct 29299 CCCCCTAGCATTTGCATGGTGCCTCCTAGATTGACGACCACTTCAGTTGTGTAGCGATCC 29358 Query 26698 TGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAA 26757 || | | ||||||| |||||||| | ||| | || | ||||| | |||||||| || Sbjct 29359 TGACCGTTTTGATCTTGCCATTTGCGTGTTTGTAAGGTCCCTTCGATATAAACCTGCGAT 29418 Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 || ||||||| ||| || | || | ||| || | ||| ||| || || ||||| ||| Sbjct 29419 CCCTTTCGCAAATATTCTTTTGCCACTTCAGCTATTTTACCGAACAAAACGACACGATGC 29478 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || || |||| ||||||| | || |||||||| ||||| ||||| ||| | ||| || Sbjct 29479 CATTCTGTCTTCTCCTTTGGTTCGCCAGTTTGTTTATCGCGCCAGCTTTCAGTCGTTGCC 29538 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC 26937 || | | ||| |||| ||| || | | || ||| | ||||||||||| || || Sbjct 29539 ACAGAGATGTTGGCAACAGCC-CCCCCGTTTGGCATATAACGAATTTCTGGATCCTGACC 29597 Query 26938 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTG 26974 | | ||||| | | || ||||| | |||||| Sbjct 29598 TAAGTTCCCAATCAAAAGGACTTTATTAATCCCTCTG 29634 >seq6017 Length=2206 Score = 84.2 bits (92), Expect = 6e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20909 TTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGA 20968 ||| | || || || ||||| ||||||||||| || |||| ||| || || ||||||||| Sbjct 124 TTGCTCTCGATATATATTCTGCCAATATATTCCCCCAGAACACCAATGCCAATCAATTGA 65 Query 20969 ACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCC 21027 | |||||| | ||||||| ||||| || | || ||||| || || || |||||| Sbjct 64 ATGCCACCTAAAAAAAGAATGGAAACCAGTAATGAAGGGTAACCCGGTACTGGATTTCC 6 >seq54220 Length=2006 Score = 80.6 bits (88), Expect = 7e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20909 TTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGA 20968 ||| | || || || ||||| ||||||||||| || |||| ||| || || ||||||||| Sbjct 124 TTGTTCTCGATATATATTCTGCCAATATATTCCCCCAGAACACCAATGCCAATCAATTGA 65 Query 20969 ACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCC 21027 | |||||| | ||||||| | ||| || | || ||||| || || || |||||| Sbjct 64 ATGCCACCTAAAAAAAGAATGGCAACCAGTAATGAAGGGTAACCCGGTACTGGATTTCC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129209488450450