Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq17432 159 7e-34 seq669 156 9e-33 seq214 147 5e-30 seq6749 120 6e-22 seq49858 89.7 1e-12 seq426 89.7 1e-12 >seq17432 Length=31749 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| || ||||||| ||| | || || ||||| || || || |||| Sbjct 24364 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAGAG 24305 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || ||||||||||| || |||||||||| | ||||| || ||| Sbjct 24304 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGGA 24245 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || ||||||||||| || || |||||| | || || |||||||| | || ||| Sbjct 24244 ATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCACT 24185 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||| || ||||| || |||| |||||| ||||||||||||||| Sbjct 24184 TCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCATT 24137 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| || ||||||| ||| | || || ||||| || || ||||||| Sbjct 24820 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAG 24761 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || ||||||||||| ||||| ||||| | ||| ||||| || ||| Sbjct 24760 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGGA 24701 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||| ||||| || || || || || ||| | || || |||||||| | || ||| Sbjct 24700 ATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGACGGCTCCACT 24641 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||| ||||| || ||||| || || |||||||| |||||| Sbjct 24640 TCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCATT 24593 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| || ||||||| ||| | || || ||||| |||||||| || | Sbjct 23972 CCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 23913 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| || ||||||||||| || |||||||||| | |||||||| || Sbjct 23912 AGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGG 23853 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| || ||||| || || ||| | || || ||||| || | || || Sbjct 23852 ATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCACC 23793 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || || || || ||||| || || ||||| || |||||||| Sbjct 23792 TCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 >seq669 Length=42814 Score = 156 bits (172), Expect = 9e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 ||||| |||| ||| | || || || || |||||||| |||| || |||||||| Sbjct 31627 CGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCG 31686 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||||| ||||| || |||||||| | | ||||| || |||||||| |||||| Sbjct 31687 TCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGAATACCTTCCTTG 31746 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || || |||||||| || ||| | ||||| || |||||||| || ||||| | ||| || Sbjct 31747 TCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAAAGTAATG 31806 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| || || | ||||| ||||||||||||||| Sbjct 31807 GTCTTTCCGGTGAGGGTCTTCACGAATATCTGCATT 31842 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||||||||||||||| |||| || |||||||| ||||||| ||||| || |||||| Sbjct 31879 TCTTTTTGGATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAG 31938 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||| || ||||| || |||||||| || |||||||| || ||| | Sbjct 31939 ATAAGTCTCTGTTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTT 31998 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || || || || ||||| | ||| || ||||| || || | || || ||| Sbjct 31999 TCGATGGTATCGGAGGCCTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACG 32058 Query 283089 AATATCTGCATT 283100 ||||| |||||| Sbjct 32059 AATATTTGCATT 32070 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| |||| || ||||| || || |||| ||||| || ||||| Sbjct 32333 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAAT 32392 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || || || ||||| || || ||||| || |||||||| ||||| | Sbjct 32393 ATCAATCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTT 32452 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | ||||| || |||||||| ||||| || || | || || || Sbjct 32453 TCGATAGTGTCAGAGGGCTCGACCTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACA 32512 Query 283089 AATATCTGCATTTTC 283103 ||||| ||||||||| Sbjct 32513 AATATTTGCATTTTC 32527 Score = 93.3 bits (102), Expect = 9e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || |||||||| || |||||||| || ||| | ||||| ||||| || || || Sbjct 32186 GGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTTTCGATGGTGTCGGAGGCCTCC 32245 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| | ||| || ||||| || || | || || ||||||||||||||| Sbjct 32246 ACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATCTGCATT 32296 >seq214 Length=17119 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| || ||| || | ||| || |||| |||||| || |||||| Sbjct 992 TCCTTTTGGATGTTGTAATCGCTAAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAG 1051 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || || || || || ||||||||||| || |||||||| ||||| | Sbjct 1052 ATCAACCGCTGCTGATCCGGAGGTATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTC 1111 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || | || || || |||||||| |||||||||||||| ||||| ||| Sbjct 1112 TCAATAGTATCGCTGGGCTCCACCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACG 1171 Query 283089 AATATCTGCATTTT 283102 || || |||||||| Sbjct 1172 AAGATTTGCATTTT 1185 >seq6749 Length=158988 Score = 120 bits (132), Expect = 6e-22 Identities = 348/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| |||| || || || ||||| ||||| || || ||||| || | ||||||||| ||| Sbjct 135601 AAATTGGATCCTTACATTAACGTAGATCCTGGCACAATGAGTCCTATTCAACATGGGGAA 135542 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 || || || || || |||||| ||||||| ||| ||||| | ||||||||||| ||||| Sbjct 135541 GTTTTTGTTACCGAGGATGGTTCTGAAACTGATTTGGATTTAGGGCACTACGAGCGTTTT 135482 Query 301546 A-CTTCATTAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGT 301604 | | || | | | | ||| | ||||||||| | || | ||||||| |||| Sbjct 135481 ATCCGCACT-AGAATGACGCGACTTAATAATTTTACCGCCGGGCGTGTTTATTCCGAAGT 135423 Query 301605 TATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACAT 301664 | || || || || || | || || |||||||| | || || || Sbjct 135422 ATTACGTAAGGAGCGTCGTGGCGATTACTTAGGCGCTACCGTGCAAGTCATCCCTCATAT 135363 Query 301665 CACCGATGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAAATCAGATATACTTATTGG 301724 ||| ||| || ||| | |||| |||| ||| || || || || | | | Sbjct 135362 TACCAATGCGATTAAAGAGCGTATTCTTGTTGCTGCTAAAGGATATGACGTAGTACTGGT 135303 Query 301725 AGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCA 301784 ||||||||| || || || || |||||||| || | || ||| | ||||||||||| || Sbjct 135302 AGAAATTGGCGGGACAGTGGGTGATATCGAGTCTTTGCCCTTTTTGGAAGCGATTCGCCA 135243 Query 301785 ACTCTCTCATGACGAAGGAACGGCC--AATGTTCTGTTCATTCATCTCGTGCTCTTACCC 301842 | | ||| || | ||| || ||| | ||| ||| | || | || Sbjct 135242 GATGGCGGTTGATATTGG--CCGCCGGTATACTCTATACATACATTTGACACTAGTGCCT 135185 Query 301843 TATATAGCGACTGCTGGTGAGTTGAAATCAAAGCCAGCACAGCATTCGGTTAAAGAATTG 301902 ||| || | || ||||| ||||| |||| ||| | || |||||||| || |||||| Sbjct 135184 TATTTAACCGTAGCAGGTGAAGTGAAAACAAAACCAACCCAACATTCGGTGAAGGAATTG 135125 Query 301903 ATGTCTCAAGGATTATT--ACCTCACATTATCATCAGCCGCTCTGACCG 301949 | ||| || |||| || ||||| | || |||||||||| || Sbjct 135124 CTTTCTATCGG--TATTCAGCCAGACATTTTGATATGCCGCTCTGATCG 135078 >seq49858 Length=227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 65 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 9 >seq426 Length=28870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 18579 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 18635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045983537709630