Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3641 104 3e-17 seq3719 95.1 1e-14 >seq3641 Length=2987713 Score = 104 bits (114), Expect = 3e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 53044 AAGGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||||| | || | |||| ||||||| || | | ||| ||||| || || || | Sbjct 2544021 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 2543963 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||||| ||| ||||||| ||| || | ||||||||| || | ||||||||| Sbjct 2543962 CCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGCGGATTGACAATAATAAATTCTCC 2543903 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 ||||||||| | || || ||||| || ||||||||||| | || || ||||| || Sbjct 2543902 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 2543843 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 ||||| || || || || || || ||||||||||| | || | | |||||| | || Sbjct 2543842 TAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCC 2543783 Query 53284 GT 53285 || Sbjct 2543782 GT 2543781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 |||| | || ||||| || ||| | |||| | |||||||||| || || ||||| | Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 54456 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 | ||||| || ||| || || || ||| || || || || || || |||| | Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATATTATTT 2542144 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | |||||| || || || || | ||| ||||| || ||||| || || || ||||| Sbjct 2542143 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 2542084 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || |||||||||| ||| | | || | ||||||||||||| ||| || || ||| Sbjct 2542083 TTGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 2542024 Query 54635 TCTCGTTCGTAAATAATA 54652 || || || || || ||| Sbjct 2542023 TCACGATCATATATTATA 2542006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 |||||| ||||| | || | | | |||||| ||||||||| || ||||| ||||| || Sbjct 2543612 ATATGTCTCGTAAGTACCCTTTTCCGCAGCTAATTCACAACTAGCTTCTAAGGCACCATA 2543553 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||| ||||||||||| || | || || |||| ||||| ||| || || ||||| Sbjct 2543552 ATAAAGTGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCTTCTTTGCTCTCGAAGGGATA 2543493 Query 53509 ---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 |||| || |||||| || |||| ||||| | || ||||| Sbjct 2543492 TCGCATTAACAG---AAACGCATCGGCTAGACCTTGTATTCCTATACC 2543448 >seq3719 Length=734917 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | ||| ||||| || ||||||||||| |||| || ||||||| |||| Sbjct 301895 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGATGCTAAGG 301836 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| |||||||| || | ||| ||||| |||| |||| ||| | |||| Sbjct 301835 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAGGTTATCCA 301776 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| ||||| |||||| Sbjct 301775 ATTCGCTTGTTGTCACTCCA 301756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593689398024720