Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3806 123 4e-23 seq3660 123 4e-23 seq4330 87.8 3e-12 >seq3806 Length=402996 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || ||||| || ||| | || ||||||| Sbjct 2778 AATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2837 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| || ||||| || || ||||| |||||||| || || ||||| || Sbjct 2838 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 2897 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || |||||||| || || || | ||| | || ||||| Sbjct 2898 GCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATAA 2957 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||||||||| | ||| | ||||| || || Sbjct 2958 CATTCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGGAAT 3008 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || || || || ||||| || || | || | ||||| Sbjct 2323 ATGCAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTCG 2382 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| ||||| || || || || ||||| Sbjct 2383 GACACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCGGATCAG 2442 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || || ||| | || ||| | |||| | ||||||||| Sbjct 2443 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAAT 2502 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | || |||||| | ||| | ||||| || || Sbjct 2503 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGAAT 2552 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || || || || ||||| || || | ||| | ||||| | Sbjct 2095 ATGCAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGCTTCT 2154 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || || ||||| ||||||||||| || || ||||| Sbjct 2155 GATACTATCGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 2214 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| ||||| |||||||||||| | |||| | || || || Sbjct 2215 CAACGTTTGATCTTTGCTGGAAAGCAATTAGAGGATGGCAGAACTCTTTCTGACTACAAC 2274 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | ||| | ||| | || || || || Sbjct 2275 ATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTTCGTGGAGGCAT 2324 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || ||||| || || | || ||||||| Sbjct 3234 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3293 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || | || ||||| || || ||||| || || ||||| ||||| Sbjct 3294 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3353 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || ||||| || || |||||| | || ||| | |||| | ||||| || Sbjct 3354 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3413 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || || |||||||| | || || ||||| Sbjct 3414 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGGTAT 3464 >seq3660 Length=1598725 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || ||||| || ||||| || | || |||| || Sbjct 290649 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290590 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| |||||||| || ||||| || || Sbjct 290589 GACACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAG 290530 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || ||||||||| | || || |||| ||| | ||||| || Sbjct 290529 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACAAC 290470 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| || |||||| |||| | ||| |||| |||||||| ||| || Sbjct 290469 ATTCAAAAGGAATCTACCTTGCATCTGGTCCTTCGTCTACGTGGTGGTATGCAAATTT 290412 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||| || | ||| | ||||| Sbjct 290193 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCA 290134 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||| || || |||||||| ||||| ||||| Sbjct 290133 GATACGATCGAGAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCACCGGATCAG 290074 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || ||||||||| | || || | || ||| | || || ||| Sbjct 290073 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAAT 290014 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || |||||||||||||| | | || |||||||| Sbjct 290013 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 289964 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || ||||| || || || || | || |||| || Sbjct 291106 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 291047 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || ||||||||||| |||||||| || || || ||||| Sbjct 291046 AGACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 290987 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || || || ||||||||| | || || | || || | || || || Sbjct 290986 GCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAA 290927 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| || |||||||||||| | |||||||| |||||||| ||| || Sbjct 290926 TATTCAGAAAGAATCCACATTGCATTTGGTTCTCCGTTTACGTGGTGGTATGCAAATTT 290868 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || ||||| || || || || | || |||| || Sbjct 290877 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 290818 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||||||||||| |||||||| || || || ||||| Sbjct 290817 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 290758 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || || || ||||||||| | || || | || || | || || ||| Sbjct 290757 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAAT 290698 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| |||||||| || |||||||||||| | |||||||| |||||||| ||| || Sbjct 290697 ATTCAGAAAGAATCCACATTGCATTTGGTTCTCCGTTTACGTGGTGGTATGCAAATTT 290640 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||| || | ||| | || || Sbjct 289965 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 289906 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || ||||||||| ||||||||||| || || || |||||| Sbjct 289905 GACACGATCGAAAACGTGAAGGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAA 289846 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || || || || |||||||| | || || ||| ||| |||||| Sbjct 289845 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCAGACTATAAT 289786 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| |||||||| || Sbjct 289785 ATTCAGAAAGAATCTAC 289769 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || ||||| || ||||| || | || |||| || Sbjct 290421 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290362 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| |||||||| || ||||| || || Sbjct 290361 GACACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAG 290302 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || ||||||||| | || || | || ||| | || || ||| Sbjct 290301 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAAT 290242 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || |||||||||||||| | | || |||||||| Sbjct 290241 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 290192 Score = 109 bits (120), Expect = 8e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || | |||||| | || || || || |||||| | || |||| || Sbjct 291336 ACCATGCAGATTTTCGTGAAGACATTGACGGGGAAGACCATAACTCTTGAAGTTGAGGCT 291277 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| ||| ||||| || || || ||||| |||||||| ||||||||| Sbjct 291276 TCTGACACTATTGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGTATCCCACCTGAT 291217 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | | || ||||| ||||| || | || ||| | || || || ||||| Sbjct 291216 CAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTAC 291157 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| ||| | ||||| ||| | | || || ||||| || Sbjct 291156 AATATTCAGAAGGAATCCACTCTCCATTTAGTTCTCAGATTGCGTGGTGGAAT 291104 >seq4330 Length=3992391 Score = 87.8 bits (96), Expect = 3e-12 Identities = 179/263 (68%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 205443 AGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACC 205502 ||| | ||| || ||||| ||||||| ||| ||| || | ||||| || || || Sbjct 1171683 AGTAACATGAGCGATCATGTAAGTCAGCAAAGAATATGACGCTATGTTAAACGGCACTCC 1171742 Query 205503 TAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA-TTAATTA 205561 ||||||||| || || ||||||||| | ||| | || || | || | ||| ||| Sbjct 1171743 TAAACCCATGTCTGCGCTTCTTTGATAAAGTTG-CGTG---GACAATTCTCCGTTATTTA 1171798 Query 205562 CATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGAT 205621 | | ||||||||| ||| ||||| || || | |||| ||| || ||| || |||| Sbjct 1171799 CGTAAAATTGTACCAAAGTGTGACACGGCGGCAATGCCATCTTTGGAATATCAATCGGAT 1171858 Query 205622 TCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATAT 205681 ||||||||| || ||| ||| ||| ||||| || |||| ||| | || | | Sbjct 1171859 TCCAGGCTGATATTATAATACGTCTGTCCTCAGGAGAATGCTTTACTTTGTGAATGACTT 1171918 Query 205682 GTGTTAATTGATCAAATCCTTGA 205704 ||||||| || | |||| || Sbjct 1171919 CCTTTAATTGGTCTATTCCTAGA 1171941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755415025955200