Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3660 109 4e-19 seq3806 89.7 4e-13 >seq3660 Length=1598725 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| |||| ||| ||||||||||| |||||||| ||| || || Sbjct 290207 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGCCCG 290266 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||||||||| ||||||| ||| ||||| || || | || || ||| Sbjct 290267 TCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTG 290326 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || |||||| ||| || | | | |||| |||| || |||| || || Sbjct 290327 TCTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATA 290386 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||||||| || || || |||||||| Sbjct 290387 GTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290421 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| |||| ||| ||||||||||| |||||||| ||| || || Sbjct 289979 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGCCCG 290038 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||||||||| ||||||| ||| || || || || | ||| |||||| Sbjct 290039 TCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATACCTTCCTTG 290098 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| |||||| || || | | | | || | | || ||||||| || || Sbjct 290099 TCCTGAATTTTAGCTTTGACATTCTCGATCGTATCTGAAGCTTCGACCTCCAGCGTGATA 290158 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || ||||| || ||||| Sbjct 290159 GTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 290193 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| ||||||||||| || ||| ||| |||| || ||||||||||||||||| Sbjct 290459 TCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCTTCAAGTTGTTTTCCGGCGAAG 290518 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| || || | || || ||||| |||||| ||| || | Sbjct 290519 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTC 290578 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| |||| || |||| || || ||||| || |||||||| || || Sbjct 290579 TCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACG 290638 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 290639 AAAATTTGCAT 290649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | |||||| | || || || || ||| ||||||||||| ||||| || | Sbjct 291107 CCACCACGCAATCTGAGAACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 291166 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || ||||| || |||||||| || ||||| ||||| || || || || Sbjct 291167 AAAGTACGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGG 291226 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| || ||| || || | | | |||| | |||| || Sbjct 291227 ATACCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACT 291286 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || | || || ||||| ||||||| |||||||| || || |||||| ||| Sbjct 291287 TCAAGAGTTATGGTCTTCCCCGTCAATGTCTTCACGAAAATCTGCATGGTGC 291338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||| || |||||||| |||||||| || || |||| || Sbjct 290669 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCA 290728 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||| ||||| ||||| | ||| || || || || | || || ||||| | Sbjct 290729 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 290788 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| |||| || |||| || || ||||| Sbjct 290789 ATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTT 290848 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| || || || |||||||| Sbjct 290849 CCTGTCAGAGTTTTGACGAAAATTTGCAT 290877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||| || |||||||| |||||||| || || |||| || Sbjct 290897 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCA 290956 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||| ||||| ||||| | ||| || || || || | || || ||||| | Sbjct 290957 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 291016 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| |||| || |||| || || ||||| Sbjct 291017 ATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTT 291076 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| ||||| Sbjct 291077 CCTGTCAGGGTTTTGACAAAGATCTGCAT 291105 >seq3806 Length=402996 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| ||| |||||| || |||||||||||||| || || | | || Sbjct 3218 AAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCT 3159 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| |||||||| |||| |||||||| || || || | ||||| |||||| Sbjct 3158 TCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCC 3099 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | | | || | | || || || | |||||| || Sbjct 3098 TGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAATTGTT 3039 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| ||||| ||||||||||| Sbjct 3038 TTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45121 TCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATC 45180 || ||| || ||||| || ||| || || || |||||||| || || | | Sbjct 3450 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 3391 Query 45181 GTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTT 45240 || ||||||||||| |||||||| |||| |||||||| || || || | ||||| || Sbjct 3390 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 3331 Query 45241 GTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 |||| ||||| ||| || | | | | || | | || || || | |||||| Sbjct 3330 GTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAAT 3271 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| ||||||||||| Sbjct 3270 TGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395054307806119