Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3806 104 2e-17 seq3660 87.8 1e-12 >seq3806 Length=402996 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| |||| ||||||||| |||||||||||||| || || || | Sbjct 2550 TCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGA 2491 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | ||| ||||| ||| | || || | || |||||| ||| Sbjct 2490 GAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGG 2431 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || || || ||||| | |||| || | | ||| ||||| | ||| Sbjct 2430 AATTCCCTCTTTGTCTTGAATTT-TGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGA 2372 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| ||| |||| || || | ||||||||||| || ||||| Sbjct 2371 CTTCAAGGGTAATGGTTTTACCCGTAAGAGTTTTTACAAAGATCTGCAT 2323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| ||||| || ||||||||||||||||| ||||| | Sbjct 3006 TCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGA 2947 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| |||||||||||||| || ||| | || | | ||| || || || Sbjct 2946 GAGTGTCCTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGG 2887 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| || || || | | || || || | | | | |||||| || || Sbjct 2886 AATGCCTTCTTTGTCTTGGATCT-TAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 2828 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| |||| ||||| | ||||| || || ||||||||| Sbjct 2827 CTTCAAGAGTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTGCATT 2778 >seq3660 Length=1598725 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | ||||||||| |||||||| ||||| || ||||| | | || Sbjct 289748 AGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCTGATAAAGTCCGT 289807 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | || |||||||| | || |||||||||||||| || | |||||| Sbjct 289808 CCATCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCT 289867 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| ||| || | | | | ||||| | |||| || | || Sbjct 289868 TTATCCTGAATTTTCGCCTTCACGTTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTA 289927 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || || | ||||| |||||||| ||||| Sbjct 289928 ATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 289965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379323939696555