Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3806 131 1e-25 seq3660 111 1e-19 seq3973 89.7 5e-13 >seq3806 Length=402996 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| ||||| | || |||||| | || Sbjct 2779 ATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCT 2838 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || ||||| |||||| | || || |||||| Sbjct 2839 GACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 2898 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| ||||| ||||||||| || ||| | || |||||| Sbjct 2899 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATAAC 2958 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || |||||| |||| || Sbjct 2959 ATTCAAAAAGAATCTACCCTTCATTTGGTTCT 2990 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| ||||| | || |||||| | || Sbjct 2551 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCT 2610 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || ||||| |||||| | || || |||||| Sbjct 2611 GATACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 2670 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||| |||||||||||||| || ||| | || |||||| Sbjct 2671 CAACGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGGACACTTTCAGACTATAAC 2730 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||||||||| || Sbjct 2731 ATCCAGAAGGAATCCACGCTTCATCTGGTTCT 2762 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| || ||| |||| |||||| | || Sbjct 3235 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTCA 3294 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || || | ||| |||||| || || | || || || || Sbjct 3295 GATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCAA 3354 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| ||||||| | ||| | ||||| ||| Sbjct 3355 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 3414 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || ||||||||||| || || || Sbjct 3415 ATCCAAAAAGAATCCACACTCCA 3437 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || ||||| ||||| || || ||||| || ||| | || || ||| | || Sbjct 2322 CATGCAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTC 2381 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || ||| | ||| ||||| || || | || || || || Sbjct 2382 GGACACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCGGATCA 2441 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| || | ||||| | ||| | |||||||| Sbjct 2442 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAA 2501 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||||||||| || ||||| |||| ||| Sbjct 2502 TATTCAAAAAGAATCCACACTTCACTTGGTTCTT 2535 >seq3660 Length=1598725 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||||||||| || || ||||| | || ||||| |||| Sbjct 290649 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290590 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||| ||||| | || || |||||| Sbjct 290589 GACACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAG 290530 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | |||||| | || | ||||| ||| Sbjct 290529 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACAAC 290470 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || | |||||||| ||| | || | || |||| Sbjct 290469 ATTCAAAAGGAATCTACCTTGCATCTGGTCCTTCGTCTACGTGGTGGTA 290421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||||||||| || || ||||| | || ||||| |||| Sbjct 290877 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 290818 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| ||||| ||||| | || || || ||| Sbjct 290817 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 290758 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| | |||||| || | || || || Sbjct 290757 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAAT 290698 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || | ||| |||| || Sbjct 290697 ATTCAGAAAGAATCCACATTGCATTTGGTTCT 290666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||||||||| || || ||||| | || ||||| |||| Sbjct 290421 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290362 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||| ||||| | || || |||||| Sbjct 290361 GACACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAG 290302 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| | | || ||||| || ||||| | |||||| Sbjct 290301 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGAC 290266 >seq3973 Length=340871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || || || || || ||||| ||||||||||| ||||| |||||| || | || | | Sbjct 474 CATGTCTTAGCATTCTTTGCCGCTTCCGATGGTATCGTTAATGAGAATCTGATTGAGAAA 415 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||||||| || | | || || | || || || || |||||| | ||||| Sbjct 414 TTCAGCCAAGAAGTGAAAATTCCCGAAGCACGTTGTTTCTATGGCTTTCAAATTGCCATA 355 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850 ||||| | ||||| || ||||| || | ||||| || || || Sbjct 354 GAAAATATTCATTCTGAGATGTACTCTTTGCTCATTGAAACTTA 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445742222744880