Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3719 104 3e-17 seq3641 93.3 5e-14 >seq3719 Length=734917 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | ||| ||||| |||||||||||||| ||||| || ||||| | |||| Sbjct 301895 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGATGCTAAGG 301836 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| |||||||| || | ||| ||||| |||| |||||||| | |||| Sbjct 301835 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAGGTTATCCA 301776 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| ||||| |||||| Sbjct 301775 ATTCGCTTGTTGTCACTCCA 301756 >seq3641 Length=2987713 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 |||| | || ||||| || ||| | |||| | |||||||||| || || ||||| | Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 63694 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 | ||||| || ||| || || || ||| || || || || || || |||| | Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATATTATTT 2542144 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 | |||||| || || || || | ||| ||||| || ||||| || || || || || Sbjct 2542143 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 2542084 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 || ||||||| || ||| | | || | ||||||||||||| ||| || || ||| Sbjct 2542083 TTGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 2542024 Query 63873 TCTCGTTCGTAAATAATAACCGAAT 63897 || || || || || ||| | |||| Sbjct 2542023 TCACGATCATATATTATAGCGGAAT 2541999 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| || || || | ||||| ||| ||||||| ||| || | |||||| || Sbjct 2543979 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGCGGATTG 2543920 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 2543919 ACAATAATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 2543860 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | || || ||||| || ||||| || || || || || || ||||||||||| | || Sbjct 2543859 ATGGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAA 2543800 Query 62505 AAACTATTTCTAAGACCGT 62523 | | |||||| | |||| Sbjct 2543799 AGAGAATTTCTTACTCCGT 2543781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629783440267920