Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3641 152 5e-32 seq2857 82.4 7e-11 >seq3641 Length=2987713 Score = 152 bits (168), Expect = 5e-32 Identities = 203/280 (73%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | | ||| | | |||||| ||| |||| || || || ||||| Sbjct 2543979 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGCGGATTG 2543920 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 |||| ||| |||||||| ||||| | || |||||||||||| ||||| |||||| Sbjct 2543919 ACAATAATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 2543860 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 ||||| || ||||| | ||| || || | ||| || || || ||||| |||||||||| | Sbjct 2543859 ATGGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAA 2543800 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 || |||||| | ||| || | || || || | ||||| ||||||||||||| Sbjct 2543799 AGAGAATTTCTTACTCCGTGCTTCGCGATCTTCGCCTTCAATTCATCCCAATCCCATAAA 2543740 Query 37315 TCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 | ||| || || | || ||||||||||||||| ||||| Sbjct 2543739 TTTGTCGGTTTAACGTT--CCACATATCATATTGGAGAAT 2543702 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||| ||||||| || || || |||||| | || || ||| ||||||||||| Sbjct 2542234 AGTACAGGCATTAAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATT 2542175 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||||||| || | ||| |||| | | |||||||| | || ||| ||||| | Sbjct 2542174 ATATGTTTCTATGACTTTATCAATATTATTTTCATGAATACCAACAGCTACTCTCATCAA 2542115 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 ||||||||| || || || | ||| ||| ||| ||| || || || | | || | Sbjct 2542114 CATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGGTAACTTCTCTCAAG 2542055 Query 38592 TGTTTTTATTCCAAAATAACTATA 38615 ||||| | |||| |||| |||| Sbjct 2542054 CGTTTTAAAACCAATATAATTATA 2542031 >seq2857 Length=5407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 11417 TTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAAT 11476 || |||||||| || |||||| | ||||| | |||||||| || || || ||| Sbjct 4319 TTTTATACATT----ACCTTTTCAAATCCTAATGCAACGAATAATCTGTCCGCAACAAAT 4374 Query 11477 TCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACT 11536 || || || | | |||| || | |||||| ||||| || || ||||| | || Sbjct 4375 TCGATGTAGTTACACATGAATGTGCGATTCATTCCTATTAGTTCAACCGGCAACGCTTGC 4434 Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTA 11596 |||||||| |||||||| || | || || || || | || || | | | || Sbjct 4435 GTCAAAAATTCCTTTTCAATTTCTACGGCGTCCATTACAATTGATTTCACACGCTCAAAC 4494 Query 11597 GATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||||| |||| | ||||||||||||||||| || ||||| || ||||| || Sbjct 4495 GATGGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCC 4550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468499388386160