Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3641 129 8e-25 seq3719 109 8e-19 >seq3641 Length=2987713 Score = 129 bits (142), Expect = 8e-25 Identities = 222/321 (69%), Gaps = 1/321 (0%) Strand=Plus/Minus Query 78954 AAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||||| | || | |||| |||||| || || | ||| ||||| || ||||| | Sbjct 2544021 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 2543963 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||||| ||| ||||||| ||| || | ||||||||| || | ||||||||| Sbjct 2543962 CCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGCGGATTGACAATAATAAATTCTCC 2543903 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 ||||||||| | || || ||||| || ||||| ||||| | ||||| ||||| || Sbjct 2543902 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 2543843 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 ||||| || || || || ||||||||||||||||| | || | | |||||| | || Sbjct 2543842 TAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCC 2543783 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 || ||| || | || | ||||||||||| | || | ||| ||| || Sbjct 2543782 GTGCTTCGCGATCTTCGCCTTCAATTCATCCCAATCCCATAAATTTGTCGGTTTAACGTT 2543723 Query 79254 CCAAAGATCATATTGTAGAAT 79274 ||| | ||||||||| ||||| Sbjct 2543722 CCACATATCATATTGGAGAAT 2543702 Score = 104 bits (114), Expect = 3e-17 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 |||| | || ||||| || ||| | |||| | |||||||||| || || ||||| | Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | ||||| || ||| |||| ||| || || || || || || |||| || Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATATTATTTT 2542143 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 |||||| || || || || | ||| ||||| || ||||| || || || ||||| || Sbjct 2542142 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 2542083 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | ||||||| || |||| | | || | ||||||||||||| ||| || || |||| Sbjct 2542082 TGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGT 2542023 Query 80546 CTCGTTCGTAAATAATA 80562 | || || || || ||| Sbjct 2542022 CACGATCATATATTATA 2542006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/169 (72%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 ||||| || |||| || | ||| || |||||||||||||| || ||||| || || | Sbjct 2543611 TATGTCTCGTAAGTACCCT--TTTCCGCAGCTAATTCACAACTAGCTTCTAAGGCACCAT 2543554 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 |||||| |||||||| || || | ||||| |||| |||||| ||| || || |||| Sbjct 2543553 AATAAAGTGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCTTCTTTGCTCTCGAAGGGAT 2543494 Query 79418 A---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | |||| || |||||| || |||| ||||| | || ||||| Sbjct 2543493 ATCGCATTAACAG---AAACGCATCGGCTAGACCTTGTATTCCTATACC 2543448 >seq3719 Length=734917 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | ||| ||||| |||||||||||||| |||| || ||||| | ||||| Sbjct 301895 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGATGCTAAGG 301836 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||||||||||||||| || | ||| ||||| |||| |||||||| | |||| Sbjct 301835 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAGGTTATCCA 301776 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| ||||| |||||| Sbjct 301775 ATTCGCTTGTTGTCACTCCA 301756 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 79306 TCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAA 79363 |||||||| |||| ||| | |||| ||| ||||| || |||| || || ||||| | Sbjct 303649 TCATAAGGACCTT--TTTCAGTAGCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAGA 303592 Query 79364 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTA 79423 || || ||||| | ||||| || | |||||| ||| ||||||||||| | | Sbjct 303591 GAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTCA 303532 Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | |||||| || |||||||||||||| ||||||||||| Sbjct 303531 TTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 303492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718229842895960