Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3660 98.7 8e-16 seq3806 96.9 3e-15 seq3043 87.8 1e-12 >seq3660 Length=1598725 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | ||| ||||| || | |||||| || || Sbjct 290195 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290254 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | |||||| ||||| || ||||| | ||| || || | || Sbjct 290255 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 290314 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || | ||||| | ||| ||||| ||||| || Sbjct 290315 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACT 290374 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || |||||||| || ||||||||||| Sbjct 290375 TCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| || | |||||| |||| || | |||||| ||||| || Sbjct 290459 TCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCTTCAAGTTGTTTTCCGGCGAAG 290518 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||| || || | || | |||||||| || || | ||||| | Sbjct 290519 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTC 290578 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| ||||| || || | || ||||| ||||| || |||||||| || Sbjct 290579 TCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACG 290638 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 290639 AAAATTTGCAT 290649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| || || || | |||||| || || | ||||| |||| || Sbjct 290669 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCA 290728 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| || || || ||||||| ||| ||||| | || | |||||||| || Sbjct 290729 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 290788 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | ||||| | | | ||||| ||||| || || | ||| || || ||| Sbjct 290789 ATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTT 290848 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || |||||||| || ||||||||||| Sbjct 290849 CCTGTCAGAGTTTTGACGAAAATTTGCAT 290877 >seq3806 Length=402996 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| ||| || || |||| ||| || ||||| | |||||||| || Sbjct 3461 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 3402 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||||||||| ||||||| ||||||||||| | || Sbjct 3401 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3342 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | || || | | | || || ||| || || Sbjct 3341 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACT 3282 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 3281 TCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||||||| | || || ||||| | || || || || Sbjct 3005 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAG 2946 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| ||||||||||| || ||||||||||| || || || || | || Sbjct 2945 AGTGTCCTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 2886 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||| || | | | |||||| || || || Sbjct 2885 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 2826 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 2825 TCAAGAGTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTGCATT 2778 >seq3043 Length=1629123 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||||||||||| || ||| | || |||| ||||||||||| || || Sbjct 1068043 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1067984 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 | |||||||||||| | ||| | || || || || |||| | ||||| | | Sbjct 1067983 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1067924 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | || || ||||| || || | || || ||||| || || || |||||||| || Sbjct 1067923 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGAAG 1067864 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 1067863 ATCTGCAT 1067856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381349432579662