Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3719 104 3e-17 seq3641 102 1e-16 seq3973 100 4e-16 >seq3719 Length=734917 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | ||| ||||| |||||||||||||| |||| || ||||| | |||| Sbjct 301895 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGATGCTAAGG 301836 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||||||||||||||| || | ||| ||||| |||| |||||||| | |||| Sbjct 301835 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAGGTTATCCA 301776 Query 72881 ATTCTACCGTTGTTACTCCA 72900 |||| ||||| |||||| Sbjct 301775 ATTCGCTTGTTGTCACTCCA 301756 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 |||| ||| ||||| || |||| || |||||||| | || || ||||| | ||| Sbjct 303628 GCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAGAGAGTCTCAAAAATTTGAACGTTG 303569 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 || || | ||||| ||| ||||||||||| | | | |||||| || ||||||||| Sbjct 303568 AGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTCATTAAAATAAATGCATCTGCTAAT 303509 Query 71530 CCTTGAACGCCAATACC 71546 ||||| || |||||||| Sbjct 303508 CCTTGTACACCAATACC 303492 >seq3641 Length=2987713 Score = 102 bits (112), Expect = 1e-16 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 |||| | || ||||| || ||| | |||| | |||||||||| || || ||||| | Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | ||||| || ||| |||| ||| || || || || || || |||| || Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATATTATTTT 2542143 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 ||| || || || || || | ||| |||||||| ||||| || || || ||||| || Sbjct 2542142 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 2542083 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | ||||||| || ||| | | || | ||||||||||||| ||| || || |||| Sbjct 2542082 TGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGT 2542023 Query 72629 CTCGTTCGTAAATAATAACCGAAT 72652 | || || || || ||| | |||| Sbjct 2542022 CACGATCATATATTATAGCGGAAT 2541999 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 71037 AAGGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||||| | || | |||| |||||| || || | ||| || || || ||||| | Sbjct 2544021 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 2543963 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||| ||| ||||||| ||| || | ||| ||||| || | ||||||||| Sbjct 2543962 CCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGCGGATTGACAATAATAAATTCTCC 2543903 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 ||||||||| | | || ||||| || ||||||||||| | || || ||||| || Sbjct 2543902 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 2543843 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCT 71270 ||||| || || || || || || ||||||||||| | || ||| |||||| Sbjct 2543842 TAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCT 2543789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 215/319 (67%), Gaps = 12/319 (4%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||||||||| | |||||| || | |||| ||||||||| | |||| Sbjct 2543388 TACCAATAGGTCTGTGTCTGTGATTAGATGTTCTCGTTTCTTCGATAGGATAAAAGTTAA 2543329 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 ||| || | ||||| ||||| | |||| ||| |||| | || || ||||| Sbjct 2543328 CATCGATGACTTTATCTAGATTACGAGTGACGATT--TTTG-CGACTGTTTTAAGTTTAT 2543272 Query 71660 GAAAATC---AAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||| || | | |||| | || |||| ||| | || | |||||| | || Sbjct 2543271 CGAAATCGAAAATTTTGGTGTCTATATTAACGAACATGTTGACAGCGATAGATGCTAAAT 2543212 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 | || || || || || || | | | ||||| |||||||| ||||| | || || | Sbjct 2543211 TGCATACAGCGACTTCTCCAGGACCAGAATATTCAATAATTTCGGTGCACAAGTTGCTGC 2543152 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | |||| || |||| || ||| ||||| ||| ||| || ||| || ||||| | Sbjct 2543151 ATTTGACAGTGCCTATATGTTGATGATTCGATTTTCGGTTGCAATGATCTTTGTAAAGCA 2543092 Query 71834 TAAACGGAGTACCAGTTTC 71852 || | || || |||||||| Sbjct 2543091 TATAAGGTGTTCCAGTTTC 2543073 >seq3973 Length=340871 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| || ||| | |||||||||||||| | |||||||||| | Sbjct 709 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTCCCAGATATCAGG 768 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||| ||||| |||||||| ||||| | ||||| Sbjct 769 ATACTGAATAGGGAAAATTACAAAACGGTTTGG 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671102799087640