Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3806 159 3e-34 seq3660 111 1e-19 >seq3806 Length=402996 Score = 159 bits (176), Expect = 3e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| | Sbjct 3450 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 3391 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||||||||| ||| | |||| ||| ||||| || ||||||||| ||||| Sbjct 3390 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 3331 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| ||| || |||| |||||||| | ||| || || | |||||| Sbjct 3330 GTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAAT 3271 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || |||||||| || || |||||||| Sbjct 3270 TGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3235 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | ||||| ||||| ||||| || ||||||||||| ||| |||| | ||| Sbjct 3218 AAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCT 3159 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| ||||||||| ||| | |||| ||| ||||| || ||||||||| |||||||| Sbjct 3158 TCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCC 3099 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || |||| |||||||| | ||| || || | |||||| ||| Sbjct 3098 TGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAATTGTT 3039 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||||||| || || |||||||| Sbjct 3038 TTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3007 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| |||||||| || || ||||| ||| |||| | ||||| Sbjct 2532 AACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGAGAGTTCTGCCATCTTC 2473 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| |||||||| | |||| ||| || || || |||||||| |||||||| Sbjct 2472 AAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCTTG 2413 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || ||| |||| ||||| || | ||| || || | |||||||||||| Sbjct 2412 AATTTTGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTTTT 2353 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||||||||||||| || ||||| Sbjct 2352 ACCCGTAAGAGTTTTTACAAAGATCTGCAT 2323 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| || ||| |||| | || || Sbjct 2304 AACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTC 2245 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| || ||||| | ||||||||||| || || ||||| ||||||||||| Sbjct 2244 TAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTG 2185 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| | || || ||||| | |||||| || | ||||||||||| Sbjct 2184 GATCTTAGCT-TTGACATTCTCGATAGTATCAGAAGCTTCTACCTCAAGGGTAATGGTTT 2126 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||||||||| |||||||| Sbjct 2125 TTCCAGTGAGAGTTTTTACAAAGATTTGCAT 2095 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || |||||||| ||||| || || || | || ||||||| Sbjct 2988 AACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAGAGTGTCCTACCGTCTTC 2929 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| ||||| | ||||||||||| ||||| ||||| ||||||||||| Sbjct 2928 CAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 2869 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| ||||| ||||||| || || ||| || || | || ||||||| Sbjct 2868 GATCTTAGCT-TTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTTT 2810 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || |||||||| || || |||||||| Sbjct 2809 TACCGGTAAGAGTTTTCACGAAGATTTGCAT 2779 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || ||||| || || || | || | ||||| Sbjct 2760 AACCAGATGAAGCGTGGATTCCTTCTGGATGTTATAGTCTGAAAGTGTCCTACCATCTTC 2701 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||||| ||||| | ||||| ||||| ||||| ||||| ||||||||||| Sbjct 2700 CAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 2641 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| ||||| ||||||| ||||| ||| || || | || ||||||| Sbjct 2640 GATCTTAGCT-TTTACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGAGTGATGGTTT 2582 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || |||||||| || || |||||||| Sbjct 2581 TACCGGTGAGAGTTTTCACGAAGATTTGCAT 2551 >seq3660 Length=1598725 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||| | ||||| || || || || ||||| || || | | | || Sbjct 290207 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGCCCG 290266 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| || ||| | ||||| | || ||||| ||| |||||||||||| Sbjct 290267 TCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTG 290326 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| ||| ||| | || || || || || || || || || || Sbjct 290327 TCTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATA 290386 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||||||||| || |||||||||||| Sbjct 290387 GTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCATA 290422 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | ||| || || ||||| ||||||||||| || | | ||||||| | ||| Sbjct 290446 ATGCAAGGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCTTCAAGTTG 290505 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | ||||| | || ||||| ||| |||||||||||||| |||||| Sbjct 290506 TTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATTTT 290565 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || || || || || || || || || || || ||||| Sbjct 290566 GGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGTCTTTCCTGT 290625 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||| || |||||||||||| Sbjct 290626 CAGAGTTTTGACGAAAATTTGCATA 290650 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | ||||| ||||| || || ||||| || || | | ||||||| Sbjct 290668 AACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTC 290727 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| |||||| | ||||| | || || || || |||||||||||||| Sbjct 290728 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTG 290787 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| | || || || || || || || || || ||||| || Sbjct 290788 AATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTT 290847 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||||||||| || |||||||||||| Sbjct 290848 TCCTGTCAGAGTTTTGACGAAAATTTGCATA 290878 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | ||||| ||||| || || ||||| || || | | ||||||| Sbjct 290896 AACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTC 290955 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| |||||| | ||||| | || || || || |||||||||||||| Sbjct 290956 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTG 291015 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| | || || || || || || || || || ||||| || Sbjct 291016 AATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTT 291075 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| ||||| || ||||| Sbjct 291076 TCCTGTCAGGGTTTTGACAAAGATCTGCAT 291105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362160047397999