Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3806 113 3e-20 seq3660 93.3 3e-14 >seq3806 Length=402996 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||| | || || |||||||| || || || || || | | | Sbjct 2993 CGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAGAGTGTCCTACCG 2934 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| ||| || |||||||||||||| | || ||||||||||| Sbjct 2933 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTG 2874 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| || ||||| || || ||| || ||||| || Sbjct 2873 TCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATG 2814 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||||||||| ||||| |||||||| Sbjct 2813 GTTTTACCGGTAAGAGTTTTCACGAAGATTTGCAT 2779 Score = 100 bits (110), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG-GTCATC 33219 ||||| || | ||| || |||||||| ||||| |||||||| | ||||| | |||| Sbjct 2531 ACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGA----GAGTTCTGCCATC 2476 Query 33220 --CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||| |||||| ||| ||| || | ||| ||||| |||| ||| || || ||||| || Sbjct 2475 TTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTC 2416 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || ||| ||| ||||| | || || || || || || || Sbjct 2415 TTGAATTTTGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGT 2356 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| ||||||||||||||||| || || |||||| Sbjct 2355 TTTACCCGTAAGAGTTTTTACAAAGATCTGCATG 2322 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || || ||| ||| || || ||||||||||| | || ||||||||||| Sbjct 2705 TCTTCCAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGAATGCCTTCTTTG 2646 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| || || || || || ||| || ||||| || Sbjct 2645 TCTTGGATCTTAGCTTTTACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGAGTGATG 2586 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| ||||| |||||||| Sbjct 2585 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 2551 >seq3660 Length=1598725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| || | |||||||||||||| || ||||| || |||||||| ||||| Sbjct 290650 ACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGA 290709 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | ||| || | ||| |||||| || || || | ||||| || | ||| Sbjct 290710 AAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGG 290769 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || || | ||| || || | | |||||||| | | Sbjct 290770 GATTCCTTCTTTGTCTTGAATTTTGGCC---TTGACATTCTCGATCGTGTCTGACGCCTC 290826 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| || || || ||||| || |||||||| |||||||||||||| Sbjct 290827 AACTTCCAACGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290877 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || || || || || |||||||||||||||||| | || || ||| Sbjct 291125 ACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 291184 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| ||| || ||||| ||||| || | || || ||||| || || Sbjct 291185 AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGGATACCTTCCTTATCCTGG 291244 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| | | ||| ||||| | | ||| || |||||||| || || Sbjct 291245 ATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 291304 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| | || || |||||||| |||||| Sbjct 291305 CCCGTCAATGTCTTCACGAAAATCTGCATG 291334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 || ||| |||||||||||||| || || || || |||||||| ||||| | | | Sbjct 290206 CCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGCCC 290265 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| || | ||| ||||| || || || | |||||||||| || || |||||||| Sbjct 290266 GTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTT 290325 Query 33274 TTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || || | ||| || || | | ||| ||||| | | ||| |||| || Sbjct 290326 GTCTTGAATTTTGGCC---TTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGT 290382 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || |||||||| |||||||||||||| Sbjct 290383 GATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290421 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| |||||| || || || ||||| || ||||||||||| | | | ||| || Sbjct 290441 ACCAGATGCAAGGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCTTCA 290500 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| ||||| || || || | |||||||||| || || |||||||| || | Sbjct 290501 AGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGA 290560 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | ||| ||||| | | ||| |||| || || || Sbjct 290561 ATTTTGGCC---TTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGTC 290617 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || |||||||| |||||||||||||| Sbjct 290618 TTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318760742542422