Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3286 197 2e-46 seq3863 176 7e-40 seq3671 170 3e-38 >seq3286 Length=2854975 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || ||||||||||||||||| Sbjct 367628 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCAGCTATT 367687 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || |||||||| ||||||||| |||| || ||| |||| ||||| | | Sbjct 367688 CGTCGTTTGGCACGACGTGGTGGTGTCAAGCGTATCTCCGGCTTGATCTACGAAGAAACT 367747 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| || ||| |||||||| ||| |||||| | |||||| | || || || Sbjct 367748 CGAGGTGTGTTAAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTTACTTACACTGAA 367807 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || ||||||| |||| || || |||||||||||||| Sbjct 367808 CACGCGAAAAGGAAGACCGTAACAGCCATGGACGTCGTATACGCCCTGAAACGTCAAGGC 367867 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 367868 AGAACTCTATACGGCTTTGGTGGTTAA 367894 >seq3863 Length=514741 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||| | | | |||| || |||||||||||||| |||||||||||||| || Sbjct 90199 GCGAAGCGTCATAGGA-AGGTCTTGCGTGATAACATCCAAGGTATCACCAAGCCAGCCAT 90257 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| | ||||| || ||||| ||| | ||||| ||| |||| ||||||| Sbjct 90258 TCGTCGATTGGCTAGACGTGGCGGTGTCAAACGTATTTCTGGCTTGATCTACGAAGAGAC 90317 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||| |||| || | | |||||| | ||||||| | ||||||||| Sbjct 90318 CAGAGGTGTCCTGAAAGTCTTTCTGGAAAACGTTATTCGTGATGCTGTGACCTATACCGA 90377 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || | |||||| | |||||||| ||||||| ||||| Sbjct 90378 ACACGCCAAGAGGAAGACTGTAACAGCTATGGATGTGGTCTATGCTCTGAAACGCCAAGG 90437 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | |||||||| || |||||| Sbjct 90438 AAGAACTCTCTATGGTTTCGGTGGTTAAT 90466 >seq3671 Length=1231184 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | || || |||||||| || ||||| |||||||| || ||| Sbjct 714051 GCAAAGAGACATCGTAAAGTACTCCGTGATAACATTCAGGGAATTACCAAGCCGGCAATC 713992 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| |||||||| ||| | || |||||| | |||||||| | Sbjct 713991 CGTCGTCTGGCACGTCGTGGCGGAGTCAAACGTATTTCCGGATTGATTTATGAAGAAACA 713932 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | | | |||||| | ||| || | ||||||||| Sbjct 713931 CGTGGTGTACTGAAGGTGTTCTTAGAAAACGTTATTCGTGACGCGGTTACCTATACCGAA 713872 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | |||||||| || ||||||| ||||||| || ||||||| ||||| Sbjct 713871 CATGCAAAAAGAAAGACTGTGACTGCCATGGACGTCGTCTACGCCCTGAAACGCCAAGG 713813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071232821927