Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3806 145 7e-30 seq3660 134 1e-26 seq3043 109 5e-19 >seq3806 Length=402996 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| | || || ||||||| || | || Sbjct 3006 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3065 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| |||||| |||||||| || |||||||| || || Sbjct 3066 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3125 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| |||||||||||| ||||||||| | ||| | |||||||| Sbjct 3126 ACAGCGTCTGATTTTCGCCGGCAAACAACTAGAAGATGGCAGAACTCTTTCTGATTACAA 3185 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| |||||||||||||| || | || | | || ||||||||| Sbjct 3186 CATTCAGAAAGAATCCACGCTTCACCTGGTTTTGCGTCTTCGAGGAGGAA 3235 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| | || || ||||||| || | || Sbjct 3234 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3293 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| |||||| |||||||| || |||||||| || || Sbjct 3294 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3353 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| |||||||||||| | ||||||| | ||| | |||||||| Sbjct 3354 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3413 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || ||||| || | || | ||||| Sbjct 3414 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 3461 Score = 134 bits (148), Expect = 1e-26 Identities = 174/236 (74%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| ||||||| | ||||| || | || Sbjct 2778 AATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2837 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || || || | |||| || | || ||||||||||| ||||| |||| Sbjct 2838 TGACACAATAGAAAACGTAA---AAGCTAAGATCCAA-GACAAAGAAGGCATTCCTCCTG 2893 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGA 25171 |||| || || | |||||||| || |||||||| ||||| | | | |||| | | || Sbjct 2894 ACCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCG--GA 2951 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || |||||||||||||| || || ||||| || || | || ||||||||| Sbjct 2952 CTATAACATTCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGGAA 3007 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||| | || |||||| |||| || | ||||| || | || Sbjct 2323 ATGCAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTCG 2382 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| ||| |||||||| || ||||| || || || Sbjct 2383 GACACCATTGAAAATGTGAAAGCCAAAATTCAA-GACAAAGAGGGAATTCCCCCGGATCA 2441 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| ||||| ||| | ||||||| | ||| | ||||| || Sbjct 2442 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAA 2501 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||||||| || || || || || | || ||||||||| Sbjct 2502 TATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGAA 2551 Score = 114 bits (126), Expect = 1e-20 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| ||||||| | ||||| || | || Sbjct 2550 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2609 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| || || || || | |||| || | || ||||||||||| ||||| |||| Sbjct 2610 TGATACAATAGAAAACGTAA---AAGCTAAGATCCAA-GACAAAGAAGGCATTCCTCCTG 2665 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| || || | || ||||| || ||||| || ||||||| | | || | || | Sbjct 2666 ACCAGCAACGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGGACACTTTCAGACT 2725 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || || ||||||||||| ||| | || || | || ||||||||| Sbjct 2726 ATAACATCCAGAAGGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 2779 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||| | || || ||| |||| || | || || || | ||| Sbjct 2095 ATGCAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGCTTCT 2154 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||||||| | || |||| || | || ||||||||||| ||||| || || Sbjct 2155 GATACTATCGAG--AATGTCAAAGCTAAGATCCAA-GACAAAGAAGGTATTCCTCCAGAT 2211 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || || |||||||| |||| | ||| | || ||| Sbjct 2212 CAGCAACGTTTGATCTTTGCTGGAAAGCAATTAGAGGATGGCAGAACTCTTTCTGACTAC 2271 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| ||||| ||| | || || Sbjct 2272 AACATCCAGAAGGAATCTACGCTTCATCTTGTTCT 2306 >seq3660 Length=1598725 Score = 134 bits (148), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| ||||| || || |||| || | ||||| ||| | Sbjct 291336 ACCATGCAGATTTTCGTGAAGACATTGACGGGGAAGACCATAACTCTTGAAGTTGAGGCT 291277 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||||||||| ||| | || ||||||| | || || || ||||| || |||||| Sbjct 291276 TCTGACACTATTGAG--AATGTAAAAGCAAAGATCCAG-GATAAGGAAGGTATCCCACCT 291220 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || |||||||| || || | ||||||| || ||| || ||| Sbjct 291219 GATCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGAT 291160 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 ||||||||||| || |||||||| || |||||||| || || Sbjct 291159 TACAATATTCAGAAGGAATCCACTCTCCATTTAGTTCTCAG 291119 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| |||| || || | |||||| | ||||| ||| |||| Sbjct 290421 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290362 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | ||| | |||| ||| ||||||||||| || ||||| ||||| Sbjct 290361 GACACTATTGAGAATGTCAAGGCCAAAATTCAA-GACAAAGAAGGAATCCCACCGGACCA 290303 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| |||||| | ||||| | || || | || ||||| Sbjct 290302 GCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAA 290243 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||| || |||||||| | ||||| || | ||||| Sbjct 290242 TATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCT 290204 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| |||| || || | |||||| | ||||| ||| |||| Sbjct 290649 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290590 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | ||| | |||| ||| ||||||||||| || ||||| ||||| Sbjct 290589 GACACTATTGAGAATGTCAAGGCCAAAATTCAA-GACAAAGAAGGAATCCCACCGGACCA 290531 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| |||||| | ||||| | ||| || | |||||||| Sbjct 290530 GCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACAA 290471 Query 25178 TATTCAAAAAGAATCCAC 25195 |||||||| ||||| || Sbjct 290470 CATTCAAAAGGAATCTAC 290453 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| |||| || || ||||||| | ||||| ||| |||| Sbjct 290877 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 290818 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| | |||| ||| ||||||||||| || || || || || Sbjct 290817 GACACGATCGAGAATGTCAAGGCCAAAATTCAA-GACAAAGAAGGAATCCCCCCAGATCA 290759 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || || || |||||| | ||||| | || || | || ||||| Sbjct 290758 GCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAA 290699 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||||||||| | ||||| || || Sbjct 290698 TATTCAGAAAGAATCCACATTGCATTTGGTTCT 290666 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || || ||||||| | ||||| ||| |||| Sbjct 291106 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 291047 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | ||| | |||| ||| ||||||||||| || || || || | Sbjct 291046 AGACACGATCGAGAATGTCAAGGCCAAAATTCAA-GACAAAGAAGGAATCCCCCCAGATC 290988 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || || || |||||| | ||||| | || || | || |||| Sbjct 290987 AGCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACA 290928 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| ||||||||||| | ||||| || || Sbjct 290927 ATATTCAGAAAGAATCCACATTGCATTTGGTTCT 290894 Score = 102 bits (112), Expect = 7e-17 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || |||||| | ||||| | || || || | || Sbjct 290193 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCA 290134 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | || |||| |||| ||| ||||| ||||| || ||||| || Sbjct 290133 GATACGATCGAG--AATGTCAAAGCTAAAATTCAG-GACAAGGAAGGTATCCCACCGGAT 290077 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || ||||| |||||| | ||||| | || || | || ||| Sbjct 290076 CAGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTAC 290017 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| || |||||||| | ||||| || | ||||| Sbjct 290016 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCT 289976 >seq3043 Length=1629123 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || || || | || |||||| |||| || |||| || ||| | Sbjct 1067853 ACCATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGCC 1067912 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||||||| | ||| || ||| ||||| || || ||||| || || Sbjct 1067913 TCTGATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGAT 1067972 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || ||||||||||| | || |||| |||||| || ||||||| Sbjct 1067973 CAACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTAC 1068032 Query 25176 AATATTCAAAAAG 25188 || || ||||||| Sbjct 1068033 AACATCCAAAAAG 1068045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433305084938285