Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2857 140 4e-28 seq3431 120 3e-22 seq3973 118 1e-21 seq4330 116 4e-21 >seq2857 Length=5407 Score = 140 bits (154), Expect = 4e-28 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||||||||| || || | || |||||||| || | |||||| | | ||||||||||| Sbjct 4628 CTTCGTCTCGCGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 4687 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | |||||||| || | || ||||| ||| || || ||||| || || || ||||||| Sbjct 4688 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACCGCCGCAAATG 4747 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAAT-TACTG-CTGATCCATTTTAAAGCCCAATC 93291 | || | |||||||| ||| | || | | | || ||||||| ||||| ||||||| Sbjct 4748 CGACTACACGTTCGGGAAACGTAGC--ACTCTCGTGATTGATCCAATTTAATGCCCAATT 4805 Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || || ||| | | |||||| ||||| || || || ||||||| | |||||| Sbjct 4806 AGCCTTCTTCCTCACACAAGGAAGTGTCTCAATCGCATTAAATAAGAAATCTC 4858 >seq3431 Length=3392949 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 811069 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 811010 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 811009 GTTCGAACCCCACACCTGGCAAATTTTT 810982 >seq3973 Length=340871 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || ||| ||||| |||||||| | ||| || || |||||||| Sbjct 308 ATATAAGTTTCAATGAGCAAAGAGTACATCTCAGAATGAATATTTTCTATGGCAATTTGA 367 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | ||||| | || | ||||||||| ||| |||| | ||| Sbjct 368 AAGCCATAGAAACAACGTGCTTCGGGAATTTTCACTTCTTGGCTGAATTTCTCAATCAGA 427 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || ||||||||||| || ||||| || || || | ||| ||||| || Sbjct 428 TTCTCATTAACGATACCATCGGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGCGT 487 Query 93542 TTCTCATC 93549 |||||||| Sbjct 488 TTCTCATC 495 >seq4330 Length=3992391 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 2201006 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 2200947 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 2200946 GTTCGAACCCCACACTTAGCAAATTTTTTTT 2200916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556830597262360