Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3660 136 4e-27 seq3806 127 2e-24 seq3043 100 3e-16 seq3641 98.7 1e-15 >seq3660 Length=1598725 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| ||||||||||||||||| | | || || |||| Sbjct 290437 AAGGACCAGATGCAAGGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTC 290496 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || || ||||| | || | || ||||||||| || || ||||||||||| || Sbjct 290497 TTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTC 290556 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| ||| | || || || || ||||| | || | || Sbjct 290557 TTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGT 290616 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||| |||||| |||||||||||||| Sbjct 290617 CTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290649 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | || | ||| | || ||||| || ||||| ||||| || | Sbjct 290194 ACCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGA 290253 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| |||||||||| || || ||||| | || | || ||||||||| || || Sbjct 290254 AAGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGG 290313 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||| ||||| ||| ||| ||| | || || || || || Sbjct 290314 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAAC 290373 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || |||| |||||| |||||||||||||| Sbjct 290374 TTCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290421 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || |||||||| ||||| ||||| || | Sbjct 290650 ACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGA 290709 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||||||||| || || || || | || | | |||||| || || || Sbjct 290710 AAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGG 290769 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||| ||||| ||| ||| ||| | || || || || || Sbjct 290770 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAAC 290829 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || |||| |||||| |||||||||||||| Sbjct 290830 TTCCAACGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || |||||||| ||||| ||||| || | Sbjct 290878 ACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGA 290937 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||||||||| || || || || | || | | |||||| || || || Sbjct 290938 AAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGG 290997 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||| ||||| ||| ||| ||| | || || || || || Sbjct 290998 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAAC 291057 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | |||||| || |||| ||||| || || || |||||| Sbjct 291058 TTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 291106 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | | || ||| || || |||| || |||||||| ||||| || || |||| Sbjct 289739 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCTGAT 289798 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||||||||| || |||| || | || || ||||||||| Sbjct 289799 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 289858 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| || || ||||| ||| || || | || || || || || Sbjct 289859 ATGCCTTCTTTATCCTGAATTTTCGCCTTCACGTTTTCGATCGTGTCTGAAGCCTCGACC 289918 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || || || | |||||| || ||||| ||||| Sbjct 289919 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 289965 >seq3806 Length=402996 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || ||||||||||||||||| || || | || || | ||||| Sbjct 2990 AGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAGAGTGTCCTACCGTCT 2931 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || ||| |||| | || |||||||| |||||||| |||||||| ||| Sbjct 2930 TCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCT 2871 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || | ||| ||| ||| || ||||| | ||| | ||| Sbjct 2870 TGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTT 2811 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| | |||||| ||||| ||||||||| Sbjct 2810 TTACCGGTAAGAGTTTTCACGAAGATTTGCATT 2778 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||| || ||||| | || || | | |||||||| ||| Sbjct 2525 TGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGAGAGTTCTGCCATCTTCAAGTTGC 2466 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| |||| || |||||||| || || |||||||| ||||| ||||| | |||| Sbjct 2465 TTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCTTG-AATTTT 2407 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | || || || || ||||| | || | ||| || || || Sbjct 2406 GGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTTTTACCCGT 2347 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | ||||||||| || || ||||| Sbjct 2346 AAGAGTTTTTACAAAGATCTGCAT 2323 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || || |||| ||| |||||||| |||||||||||||| | | || | | ||||| Sbjct 3215 ACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCTTCT 3156 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || |||||||| |||| || ||||| || || || |||||||| ||||| || || Sbjct 3155 AGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGG 3096 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| || || | ||||| || || ||||| | || | || || Sbjct 3095 ATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAATTGTTTTA 3036 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| | |||||| ||||| ||||||||| Sbjct 3035 CCGGTGAGAGTTTTCACGAAGATTTGCATT 3006 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | |||| || | || ||||||||||| ||||||||||| | Sbjct 3462 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 3403 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || || |||||||| |||| || ||||| || || || || Sbjct 3402 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3343 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| ||||| || || ||||| ||| || || | ||||| || || || Sbjct 3342 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAAC 3283 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || || ||||| | |||||| ||||| ||||||||| Sbjct 3282 TTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3234 >seq3043 Length=1629123 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||||||| | | ||||| | || || ||||| |||||||| | | Sbjct 1068045 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1067986 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| ||||| || || || |||||||| || || || || || || ||| ||| || Sbjct 1067985 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 1067926 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| ||| || || || | || | ||| || || || | ||||| |||| Sbjct 1067925 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGA 1067866 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 1067865 AGATCTGCAT 1067856 >seq3641 Length=2987713 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 ||| || || | ||||||||| | |||||| | |||||| || |||| || | ||||| Sbjct 2543911 AAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTC 2543852 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 ||| || ||||| || || ||||| | || || |||||| || | || | ||| || Sbjct 2543851 GTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATT 2543792 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG 154210 || | ||||| || || || | || || || |||||| ||| || || || || Sbjct 2543791 TCTTACTCCGTGCTTCGCGATCTTCGCCTTCAATTCATCCCAATCCCATAAATTTGTCGG 2543732 Query 154211 TTGCACGTTCCACATGTCGTATTG 154234 || ||||||||||| || ||||| Sbjct 2543731 TTTAACGTTCCACATATCATATTG 2543708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499617700515160