Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3806 150 4e-31 seq3660 138 3e-27 seq3043 113 1e-19 >seq3806 Length=402996 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| | || | |||||| || || || ||||||| |||||| |||| | ||| Sbjct 3455 CGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT 3396 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || || |||||||| || |||||||| || ||||| |||||| Sbjct 3395 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCC 3336 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| || || ||||||| ||||| ||| |||| | ||| || || | Sbjct 3335 TCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGG 3276 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| |||||||||||||| || ||||| Sbjct 3275 GTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTG 3238 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || ||||| || || || || || || | |||||| |||| | ||| Sbjct 3228 TCGAAGACGCAAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGT 3169 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| || || || |||||||| || |||||||| || ||||| |||||| Sbjct 3168 TCTGCCATCTTCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCC 3109 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || ||||||| ||||| ||| |||| | ||| || || | Sbjct 3108 CTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAG 3049 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| |||||||||||||| || ||||| Sbjct 3048 GGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTG 3010 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || || || || || || ||||| |||| ||| ||||| | | || Sbjct 2772 TCGAAGACGCAGAACCAGATGAAGCGTGGATTCCTTCTGGATGTTATAGTCTGAAAGTGT 2713 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| |||||||||| ||| || || || ||||| | || |||||||| ||| ||| || Sbjct 2712 CCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGAATGCC 2653 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || ||| ||| | || || | | ||| || || | Sbjct 2652 TTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAG 2593 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| |||||||||||||| || ||||| Sbjct 2592 AGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTG 2554 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| ||||| || || || || ||||| |||| ||||||||||| | ||| Sbjct 2315 CGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTT 2256 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| || | |||||||| || ||||| | ||| ||||| || ||| ||| ||| Sbjct 2255 CTGCCATCCTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCT 2196 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| || || |||| || || | | |||||| || | Sbjct 2195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCGATAGTATCAGAAGCTTCTACCTCAAGG 2136 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| ||||| ||||| Sbjct 2135 GTAATGGTTTTTCCAGTGAGAGTTTTTACAAAGATTTG 2098 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || || || ||||| | || || |||| | ||| Sbjct 2544 TCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGAGAGT 2485 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| || ||||| || || || || ||||||||||| ||||| |||||| Sbjct 2484 TCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCC 2425 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| ||| || ||||| ||| | |||||| | | ||| || || | Sbjct 2424 CTCTTTGTCTTGAAT-TTTGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGACTTCAA 2366 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| |||||||| ||||| || || Sbjct 2365 GGGTAATGGTTTTACCCGTAAGAGTTTTTACAAAGATCTG 2326 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || | || || || || || ||||| | ||| ||||| | | || Sbjct 3000 TCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAGAGTGT 2941 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| || ||||||| || || || || || || | ||| |||||||| ||| ||| || Sbjct 2940 CCTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCC 2881 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || ||| ||| | ||||| | | ||| || || | Sbjct 2880 TTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAG 2821 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || ||||||||||| || ||||| Sbjct 2820 AGTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTG 2782 >seq3660 Length=1598725 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||| || |||||||| || || || || || || | || ||||| | ||||| Sbjct 289744 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCTGATAAAGT 289803 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||| || |||||||| || ||||| || || | || || || ||| ||| || Sbjct 289804 CCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCC 289863 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| |||||||| || ||||||| ||||| ||||||| | || || |||| Sbjct 289864 TTCTTTATCCTGAATTTTCGCCTTCACGTTTTCGATCGTGTCTGAAGCCTCGACCTCCAG 289923 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||||||||| |||||||| || Sbjct 289924 CGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTG 289962 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || | || || |||||||| | |||||| |||| | || | || ||| Sbjct 290438 AGGACCAGATGCAAGGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCT 290497 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || |||||||||||||| | | |||||||||||| ||||||||| || Sbjct 290498 TCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCT 290557 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| || || | ||||||| | || || ||||| ||||| ||| Sbjct 290558 TGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGTC 290617 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| || |||||||| Sbjct 290618 TTTCCTGTCAGAGTTTTGACGAAAATTTG 290646 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || ||||| || | ||||| |||| |||||| | ||| Sbjct 291118 TCTGAGAACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAAGTACGTCC 291177 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||||||||||||||||| ||||| | ||||||||| || || || ||||| Sbjct 291178 ATCTTCCAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGGATACCTTCCTT 291237 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| |||||| || || || | ||||| | | || || || | || || Sbjct 291238 ATCCTGGATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACTTCAAGAGTTAT 291297 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| | || ||||| ||||| || Sbjct 291298 GGTCTTCCCCGTCAATGTCTTCACGAAAATCTG 291330 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| || | || | || || ||||| || | |||||||||| | || Sbjct 289973 CGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTA 290032 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || |||||||||||||| | | |||||| ||||| || ||| Sbjct 290033 CGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATACCT 290092 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| ||| || || || |||| || |||| | ||| || |||| Sbjct 290093 TCCTTGTCCTGAAT-TTTAGCTTTGACATTCTCGATCGTATCTGAAGCTTCGACCTCCAG 290151 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || ||||| ||||||||||| |||||||| || Sbjct 290152 CGTGATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTG 290190 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| || | || | || || ||||| || | |||||||||| | || Sbjct 290201 CGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTA 290260 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || |||||||||||||| | | |||||||||||| |||||| Sbjct 290261 CGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCT 290320 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||| || ||| || || | ||||||| | || || ||||| Sbjct 290321 TCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAAT 290380 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || |||||||| || |||||||| Sbjct 290381 GTGATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTG 290418 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || || || | |||||||||| | || | || ||||| || || ||||| Sbjct 290681 GTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCA 290740 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | |||||| || || ||||||||| || ||||| || ||| Sbjct 290741 GCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTG 290800 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| ||||||| | || || ||||||||||| ||||| || || |||||| Sbjct 290801 ACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAGAGTT 290860 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 290861 TTGACGAAAATTTG 290874 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || || || | |||||||||| | || | || ||||| || || ||||| Sbjct 290909 GTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCA 290968 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | |||||| || || ||||||||| || ||||| || ||| Sbjct 290969 GCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTG 291028 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| ||||||| | || || ||||||||||| ||||| || || || ||| Sbjct 291029 ACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAGGGTT 291088 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 291089 TTGACAAAGATCTG 291102 >seq3043 Length=1629123 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| |||||| || | |||||| | |||||| |||||||| || |||||||||||| Sbjct 1068043 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1067984 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || ||||| || || || |||||| || ||||| ||||| ||| || ||| Sbjct 1067983 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1067924 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | || || | | ||||| || | || || || ||||||||||| |||||||| || Sbjct 1067923 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGAAG 1067864 Query 199622 ATTTG 199626 || || Sbjct 1067863 ATCTG 1067859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178856059695713