Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3806 114 9e-21 seq3660 91.5 1e-13 >seq3806 Length=402996 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || ||||| || | ||| ||||||||| ||||||||||| | Sbjct 2549 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 2490 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | ||| || || ||||||| | |||||||||||||| ||| Sbjct 2489 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 2430 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| ||| | | | | ||||| | ||| || Sbjct 2429 ATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGACT 2370 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| ||||||||||| | ||||||||| |||||||||||| Sbjct 2369 TCAAGGGTAATGGTTTTACCCGTAAGAGTTTTTACAAAGATCTGCATG 2322 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||||||| | || ||||||||| || ||||| || | Sbjct 3005 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAG 2946 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | || ||||||||||| || ||||||| ||||| ||||| || | || Sbjct 2945 AGTGTCCTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 2886 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| || || ||| | | ||| |||||| | | ||| || Sbjct 2885 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 2826 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || |||||||| || | |||||| |||||||| ||||| Sbjct 2825 TCAAGAGTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTGCAT 2779 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| ||| || || || ||||| || | Sbjct 2777 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCCTTCTGGATGTTATAGTCTG-- 2720 Query 39553 AAAACGCGTT--CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | | |||| ||||| ||||| || |||| || || || ||||| || | | Sbjct 2719 AAAGTGTCCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAG 2660 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||||||||| || || ||| | | ||| ||| || | | ||| | Sbjct 2659 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTATCAGAGGCTTCAA 2600 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || |||||||| || | |||||| |||||||| ||||| Sbjct 2599 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 2551 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| |||| || | ||| |||||| || || || ||||| | Sbjct 3233 CCTCCTCGAAGACGCAAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAG-- 3176 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| || | |||||| ||| | ||||| | |||||| ||||||| Sbjct 3175 --AAAGAGTTCTGCCATCTTCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGG 3118 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | || |||||||| ||||| || | | | | || |||| ||| Sbjct 3117 TGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTC 3058 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||||||||||| || | |||||| |||||||| ||||| Sbjct 3057 AACTTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3007 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||||||||| || || ||||| | || | |||| ||| |||| |||||| ||| Sbjct 3426 TTCTTTTTGGATGTTGTAATCAG----AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGG 3371 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| | |||||| ||||||| || | || |||||||| ||||| || | Sbjct 3370 CGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCA 3311 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 | | | || |||| ||| || || | |||||||||||||| || | ||||| Sbjct 3310 CGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAATTGTTTTACCGGTGAGAGTTT 3251 Query 39704 TTACGAAGATCTGCAT 39719 | |||||||| ||||| Sbjct 3250 TCACGAAGATTTGCAT 3235 >seq3660 Length=1598725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| ||| |||||| || ||||| || || | Sbjct 290651 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAG-- 290708 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || | || || | |||||| || | || || || | ||||||||| | || Sbjct 290709 AAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGG 290768 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCC 39669 | | ||||||||||| ||||| || | || | | ||||||| ||| || Sbjct 290769 GGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGACGC-CTCA 290827 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || || || || || | |||||| ||||| || ||||| Sbjct 290828 ACTTCCAACGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| ||| |||||| || ||||| || || | Sbjct 290879 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAG-- 290936 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || | || || | |||||| || | || || || | ||||||||| | || Sbjct 290937 AAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGG 290996 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCC 39669 | | ||||||||||| ||||| || | || | | ||||||| ||| || Sbjct 290997 GGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGACGC-CTCA 291055 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || || || || || | ||||| || ||||||||||| Sbjct 291056 ACTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 291105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || || ||||| | |||| ||| || || ||||| ||||| | | Sbjct 291107 CCACCACGCAATCTGAGAACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 291166 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| |||| || || ||| |||| || |||||||||||||| | || Sbjct 291167 AAAGTACGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGG 291226 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || ||| ||| | || | | ||||| | || || Sbjct 291227 ATACCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACT 291286 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || ||||| || || || ||||| ||||||||| Sbjct 291287 TCAAGAGTTATGGTCTTCCCCGTCAATGTCTTCACGAAAATCTGCATG 291334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347351230552787