Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3806 131 2e-25 seq3043 127 2e-24 seq2857 96.9 3e-15 >seq3806 Length=402996 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || ||||| || ||| |||| || || || | Sbjct 3234 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3293 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | ||||| | || | ||||||| ||||||||||||||||| | || | Sbjct 3294 AGATACCATCGAAAACG-TGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATC 3352 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| ||||| || | | || || || |||| Sbjct 3353 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 3412 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||| ||| | || || || || || Sbjct 3413 ACATCCAAAAAGAATCCACACTCCACTTAGT 3443 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || ||||| || ||| |||| || || || | Sbjct 3006 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3065 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | ||||| | || | ||||||| ||||||||||||||||| | || | Sbjct 3066 AGATACCATCGAAAACG-TGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATC 3124 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| || || || | | || || || |||| Sbjct 3125 AACAGCGTCTGATTTTCGCCGGCAAACAACTAGAAGATGGCAGAACTCTTTCTGATTACA 3184 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || ||| | ||||| || |||| ||||| | |||| || Sbjct 3185 ACATTCAGAAAGAATCCACGCTTCACCTGGTTTTGCGTCTTCGAGGAGG 3233 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || || ||||||||||| | || || || ||| | Sbjct 2778 AATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2837 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || |||| |||||||| || ||||| | |||| Sbjct 2838 TGACACAATAGAAAACG-TAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACC 2896 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | |||| || || ||||| |||| |||| | || ||| ||||| | Sbjct 2897 AGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATA 2956 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || |||||||| |||||| | |||| || Sbjct 2957 ACATTCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGG 3005 Score = 120 bits (132), Expect = 3e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || ||||||||||| | || || || ||| | Sbjct 2550 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2609 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | |||| || |||| |||||||| || ||||| | |||| Sbjct 2610 TGATACAATAGAAAACG-TAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACC 2668 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419 | || || | || | || || |||||| |||| || | || ||| ||| ||||| Sbjct 2669 AGCAACGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGGACACTTTCA--GACTA 2726 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| |||||| | ||||| ||| |||| |||||| | |||| || Sbjct 2727 TAACATCCAGAAGGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGG 2777 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| || ||||| |||||||| ||| | || ||||| || | Sbjct 2323 ATGCAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTCG 2382 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| ||||| | |||||||||||||||||| | || || Sbjct 2383 GACACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCGGATCAG 2442 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || ||||| || || || || | | || ||| || || || Sbjct 2443 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAAT 2502 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| || ||| | |||| || Sbjct 2503 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGG 2549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| ||||| || |||||||| ||| | || || || || | Sbjct 2095 ATGCAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGCTTCT 2154 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| |||||||| || ||||| | || || Sbjct 2155 GATACTATCGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 2214 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || | || || | | || || ||||||||| Sbjct 2215 CAACGTTTGATCTTTGCTGGAAAGCAATTAGAGGATGGCAGAACTCTTTCTGACTACAAC 2274 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | ||||| ||| | || |||||| Sbjct 2275 ATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGT 2310 >seq3043 Length=1629123 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| |||||||| ||| |||| || |||||| | Sbjct 1067856 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 1067915 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| ||||||||||| | || ||| Sbjct 1067916 GATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 1067975 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| |||||||||||||| || | ||||| | ||| |||||| Sbjct 1067976 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 1068035 Query 38424 ATCCAAAA 38431 |||||||| Sbjct 1068036 ATCCAAAA 1068043 >seq2857 Length=5407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || || |||||||||||||| || | || ||||||| || ||||| || Sbjct 4630 TCGTCTCGCGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTT 4689 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 |||||||| ||||| ||||||||||| ||||||| ||||| || ||||| || || Sbjct 4690 AGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACCGCCGCAAATGCG 4749 Query 133039 ACCAGGCGCTCGCCGAACGTGGC 133061 || | || ||| ||||| || Sbjct 4750 ACTACACGTTCGGGAAACGTAGC 4772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145671877760