Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3105 336 3e-87 seq3743 288 1e-72 seq3776 82.4 1e-10 >seq3105 Length=3863317 Score = 336 bits (372), Expect = 3e-87 Identities = 869/1311 (66%), Gaps = 20/1311 (2%) Strand=Plus/Minus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||||| || | ||||| |||| | ||||| ||||||||||||||| || || | | Sbjct 1685147 TCGACTGTACTCTTCATATTGA-AGCAGTAAGATTCGAGACCATTCTTGGCAGAGATCGT 1685089 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || | | ||| || || ||| || || || || || | ||||| ||||||| Sbjct 1685088 TTCCTTCTGCTTCTCGTCCTCACTGCGGTATTTCTCTGCTTCATTCACCATTCTTTCAAT 1685029 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 || ||||| | || ||||| || || || || || ||||| | || || | Sbjct 1685028 ATCCTCTTTGCTGAGTCGACCCTTGTCGTTGGTGATAGTGATCTTGTTCTCCTTGCCAGT 1684969 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 | || || | || ||||| | || || || ||||| | |||||| | || | Sbjct 1684968 AGATTTGTCCACGGCGGAAACATTGAGGATGCCGTTCGCATCGATGTCGAACGTCACCTC 1684909 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||| || || || | ||||| | ||||||||| | | || ||| |||| ||||| Sbjct 1684908 AATCTGAGGAACTCCACGAGGTGCTGGTGGAATACCGCTAAGTTCGAATTTACCCAGTAA 1684849 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 | | |||||| | | | | || ||||| || || || | ||| ||| ||||||| Sbjct 1684848 ATTATTATCCTTGGTCATGGCGCGCTCACCCTCGTACACCTGAATCAACACGCCAGGTTG 1684789 Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915 ||| || |||| ||| |||| | ||| | || || || ||||||||| Sbjct 1684788 ATTGTCGGCGTAAGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTT 1684729 Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975 ||| | || ||||| | |||||| ||| || | || ||||| || || || || || Sbjct 1684728 AATGAGCGCAGTCATGACACCACCGGCAGTCTCAATACCCAGAGAGAGCGGAGTGACATC 1684669 Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 | | | || |||||| || ||| ||||| ||||| || || || || Sbjct 1684668 GAGCAAAAGCAAGTCTTGCACCTCCTCGGATTTATCACCGTGCAAGATAGCCGCCTGTAC 1684609 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | ||| || ||||| || ||||| || || || || | ||| || || ||||| || || Sbjct 1684608 TGCCGCGCCATATGCCACAGCCTCGTCAGGATTGATAGATTTGTTAAGCTCTTTGCCATT 1684549 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 ||| | || | | | ||||| || || ||||| || || || ||||| ||||| Sbjct 1684548 GAAAAAGTCTTGCAGGAGCTTCTGAATCTTGGGAATTCGCGTAGAGCCTCCGACTAAAAC 1684489 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215 ||| || | | || | ||| || || || | ||| || || | ||||| || ||||| Sbjct 1684488 GATATCGTGGATTTGGGCTTTGTCCATTTTGGCGTCGCGCAGCGACTTTTCAACGGGTTC 1684429 Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275 | | ||||| | || || |||||||| ||||| || ||||| ||||| || Sbjct 1684428 AAGAGTACCGCGGAAGAGATCGGCGCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAAGT 1684369 Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335 |||||||| | || || || |||||||| || || ||| | | || | | || || Sbjct 1684368 GTAGAAATCGATTCCCTCATACAACGAATCGATCTCGATGCTGGCCTGGGTGGAGGATGA 1684309 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 | || ||||| || || || || ||||| || | ||||||||| || || ||| Sbjct 1684308 CAGGGTACGCTTGGCACGTTCGCAAGCCGTGCGAAGACGACGAAGTGCGCGTTTGTTCGA 1684249 Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCT 7452 | | ||| ||||| | ||||||||| || |||| |||||| | || | | | | Sbjct 1684248 AGTCAAATCCTTCTTGTATTTACGTTTGAATTCTTGCACGAAGTGATTGACCATGCGGTT 1684189 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 |||||| || || |||||||| || ||||| || || || | ||||| || ||||| Sbjct 1684188 ---ATCGAAGTCCTCGCCACCCAAATGAGTATCTCCAGCCGTGGACTTGACCTCGAAGAT 1684132 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 ||| |||| ||| | | | || ||||| || || |||||||| || ||||| || || Sbjct 1684131 ACCATCTTCGATGGTCAGGATGGACACATCGAAAGTGCCACCACCGAGATCAAAGATAAG 1684072 Query 7573 TACGTTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 ||||| ||| ||| | || || || ||||||||||| || || || || || | Sbjct 1684071 GACGTT----TCGCTCGCCGGTGGCCTTTTTGTCGAGACCGTATGCAATCGCGGCGGCGG 1684016 Query 7629 TTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | || || || |||||||| || || ||| | ||| | || || | || || || || Sbjct 1684015 TGGGCTCGTTGATAATACGCAATAC-GTTTAAGCCCGAGATGGTACCAGCGTCCTTGGTT 1683957 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747 || || || ||||| ||||| ||||| || ||||| || | || || | ||||| || Sbjct 1683956 GCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCATTGGTGACAGTC 1683897 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCA-TTTTGGTAAGAACCATCGA 7797 || || | || | || || | || |||| |||| |||| |||||||| Sbjct 1683896 TTGCCTAAGTATGCCTCTGCAGTCTCCTTCATTTTTACTAAG-ACCATCGA 1683847 Score = 127 bits (140), Expect = 3e-24 Identities = 143/188 (76%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| ||||||||| || ||||| |||||||||||| Sbjct 1682476 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGGTTCTTGGCGGCGTCTCCGATAAGACGT 1682417 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGC 8076 || ||||||| || || || || | |||| ||||| || || || || ||||| || Sbjct 1682416 TC---GGTTTCCGTGAAGGCCACATA-GCTGGGCGTCGTGCGGTTGCCCTGATCGTTGGC 1682361 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || || || || | ||| ||| ||||||| ||||| || || ||||| || | ||| Sbjct 1682360 GATGATCTCGACCTTGCCGTGTTGGAAGACGCCAACGCAGGAGTAAGTTGTGCCAAGATC 1682301 Query 8137 AATACCGA 8144 |||||||| Sbjct 1682300 AATACCGA 1682293 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || || || || || || || || || ||||||||| | ||| Sbjct 1736735 ATCGAAATCTTCGCCTCCTAAATGAGTGTCGCCATTAGTGGCAACGACTTCAAACACACC 1736676 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||| | | ||| || ||||| || || || ||||||||||| | ||||| Sbjct 1736675 GTTATCAATAGTGAGCAAACTGACGTCAAAGGTGCCGCCGCCCAGGTCAAACACCAGTAC 1736616 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||||| || ||||| | |||||| || || || || || || || || Sbjct 1736615 GTTTTTCTCGCCGTCT---TTTTTATCCAAACCGTATGCAATTGCAGCGGCAGTCGGCTC 1736559 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || ||||| | | | || ||||| ||| ||| | |||||||| || || ||| Sbjct 1736558 GTTGATAATTCTCATTACGACCAAGCCAGAAATTGTTCCGGCATCTTTAGTGGCCTGT 1736501 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| ||| | ||| || ||||| ||||| || || || || |||| ||||||||||| Sbjct 1736298 TGTCTTTGTGCATCATTGAAGTAAGCCGGTACAGTAACTACGGCGTGAGTGACTTTCTTG 1736239 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 |||||||| | || ||| | || ||||| ||| | |||||| | ||||| ||||| Sbjct 1736238 CCGAGATAGGCCTCGGCGGTTTCCTTCATCTTGCCCAAAACCATAGCCGAAATTTCTTCT 1736179 Query 7811 GCCGCAAA 7818 | ||| || Sbjct 1736178 GGCGCGAA 1736171 >seq3743 Length=1230821 Score = 288 bits (318), Expect = 1e-72 Identities = 737/1111 (66%), Gaps = 12/1111 (1%) Strand=Plus/Plus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| || || | |||||| | || | ||||| ||| ||| || ||||| | | Sbjct 195695 TACCATTGGCGTCGATATCGAAAGTAACTTCGATTTGCGGTACACCTCTAGGTGCTGGAG 195754 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 |||||||||| | |||||| | ||||| | | ||||| ||| | || | || | Sbjct 195755 GAATACCCGTCAGCTCAAATTTGCCAAGGATGTTATTATCTTTCGTCATCGCTCTCTCTC 195814 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT- 6883 | || ||||| | ||| ||| | |||||||| || || | ||| | || Sbjct 195815 CCTCGTAGACCTGAATGAGCACGCCCGGTTGATTGTCGGAGTATGTGGTGAACGTCTGGG 195874 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 ||| | || | ||| |||||||| || ||| || | | |||||||| || || Sbjct 195875 TCTGT-TTCGTTGGTATCGTCGTGTTCCTCTTGATCAAGGTGGTCATAACGCCGCCAGCG 195933 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || | || | || | || || |||||||| || | || ||||| || ||| Sbjct 195934 GTCTCAATACCCAATGATAATGGAGTAACGTCCAACAGAAGTAGATCTTGGAC---TTC- 195989 Query 7004 TTCC--CTTCAC-CCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059 ||| ||| | |||| ||| |||| || || || | || || || || || ||||| Sbjct 195990 TTCAGACTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTC 196049 Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTG 7119 || || ||||| | |||||||||||| || || ||||| |||| | | || || Sbjct 196050 GTCCGGATTAATGGATTTATTCAGTTCCTTGCCATTAAAGAAATCTTGAAGTAGTTTCTG 196109 Query 7120 AATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATC 7179 |||||| || || | || || |||||||| | |||||| | |||| | |||||| Sbjct 196110 AATTTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATC 196169 Query 7180 GATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCAT 7239 ||||| | |||| ||| | || || || ||||| | | | | |||| || Sbjct 196170 CATCTTCGCATCTCTAAGAGCCTTCTCCACGGGTTCGAGAGTGCTTCTAAACAGATCAGC 196229 Query 7240 ACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAA 7299 || || ||||| || | || | || | ||||||||||| |||| || || |||| Sbjct 196230 GCAGAGCTCCTCGAACCTGGCTCTAGTGACCGATGTATAGAAGTCAATCCCCTCAAATAA 196289 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 ||||| || |||||| | | || | || ||| ||||||| ||| || | |||||| Sbjct 196290 TGAATCGATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTCGCTCTCTCACA 196349 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 || || | || || | || || | | ||||| | | ||||||||| | ||| | Sbjct 196350 AGCAGTCCTTAGGCGTCTCAGAGCTCTCTTGTTACTGCTCAGATCTTTCTTGTATTTCCT 196409 Query 7420 TTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 ||||| |||| || | || || | | || || ||||| || ||||| | | Sbjct 196410 CTTAAATTCTTGCACA-AAATGGTTCACCATTCGGTTGTCAAAATCCTCGCCACCAAGAT 196468 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538 | || || || || || | ||| || || |||||||| | || || | | | ||| | Sbjct 196469 GCGTGTCGCCAGCCGTGGATTTCACCTCGAAGATACCATCCTCGATCGTCAGAATCGACA 196528 Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCT 7598 | ||||| ||||||||||||| |||||| || || || || | || | | || | Sbjct 196529 CGTCAAAAGTACCACCACCCAAGTCAAAGATCAGAACATTTTTTTCACCTGCAGCCTTTT 196588 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 |||||||||| ||||| || || || || || ||||| || || || | ||| ||||| Sbjct 196589 TATCGAGACCATACGCTATCGCGGCGGCTGTGGGTTCGTTTATTATTCTGAGAACGTTCA 196648 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||||||| | ||||| || |||||||||| ||| || || || || || |||| Sbjct 196649 AGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTTTGAGAGTCATTGAAATAAGCCG 196708 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | || | | || || | || | ||||| | || |||| Sbjct 196709 GCACAGTGATGACGGCATTTGTTATAGTTTTGCCCAAGTATGCCTCCGCCGTCTCCTTCA 196768 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || || | ||||| || || | |||||| Sbjct 196769 TCTTCGTCAAGACCATAGAGGACACCTCTTC 196799 >seq3776 Length=520173 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 22441 AAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAAT 22500 ||||||||||| ||||| || || || || ||||| |||||| ||| |||||||| Sbjct 111973 AAATTTTATCATGCATCAACGTCCGAACTTTACGGCAAAGTACTGGAAGTTCCACAAACC 112032 Query 22501 GAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 ||||| ||||| ||||| || || || |||||||| Sbjct 112033 GAAAAGACACCATTTTATCCACGCTCTCCATATGG 112067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635098351984760