Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3973 107 2e-18 seq3641 102 9e-17 >seq3973 Length=340871 Score = 107 bits (118), Expect = 2e-18 Identities = 144/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| || ||||||||||||||||| || || ||||| || || ||||| | |||||| Sbjct 331 GTACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTC 390 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | || | ||||| | ||| | || | || ||| |||||||| || ||||| Sbjct 391 GGGAATTTTCACTTCTTGGCTGAATTTCTCAATCAGATTCTCATTAACGATACCATCGGA 450 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT--- 19430 ||| ||||| |||||||| ||||| ||||| |||| ||||| || ||| | | Sbjct 451 AGCGGCAAAGAATGCTAAGACATGAGAGATAAAGCGTTTCTCATCGGAATTTAGTTTTTC 510 Query 19431 ATTCCAATCATTAATATCTT 19450 |||||| || || | |||| Sbjct 511 ATTCCAGTCCTTTTTGTCTT 530 >seq3641 Length=2987713 Score = 102 bits (112), Expect = 9e-17 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| ||||| |||||||||||| | ||| | | ||||||||| ||||| Sbjct 2543929 ATGCGGATTGACAATAATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGT 2543870 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| ||||| || ||||| ||||| || ||||| || || || || || || ||||| | Sbjct 2543869 ATACGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGG 2543810 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||| | ||| | |||||||||||| | || |||| | ||| Sbjct 2543809 TGCTATTAAAAGAGAATTTCTTACTCCGTGCTTCGCGATCTTCGCCTTCAATTCATCCCA 2543750 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||||| | || || || ||| ||||| | ||||||||| ||||| Sbjct 2543749 ATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 2543702 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 |||| | || ||||| ||| ||| | ||| | | |||||||| ||||| || |||| Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| || || || || | ||||||||||| || || ||| |||| || Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATATTATTTT 2542143 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 ||| ||||| | || ||| | ||| ||||||| |||||| || || || || || || Sbjct 2542142 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 2542083 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 | ||||||| || || | | || | ||||||||||||| ||| || || Sbjct 2542082 TGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATA 2542031 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || || |||||||| | ||| || | ||||| ||||||||||| || ||||| || || Sbjct 2542624 TTTCTCTTAAGTTCCAAAAAATCGAAAATATCGGCATGCCATGGCTCCAAATAAATAGCA 2542565 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | | || |||| ||||||||| |||||||| | ||| |||| ||| |||||| | | Sbjct 2542564 AATGCTCCGGGTCTTTTATTACCACCTTGATCAACATAAATGGCCATATCGTTATACAAT 2542505 Query 48399 CTTAACAT 48406 |||| || Sbjct 2542504 TTTAAAAT 2542497 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||| ||| | || | || |||||||||| ||| |||||||| || || ||| || Sbjct 2543244 TAACGAACATGTTGACAGCGATAGATGCTAAATTGCATACAGCGACTTCTCCAGGACCAG 2543185 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 ||||| || ||||| | || | || | ||||||| ||| || | || |||||||| Sbjct 2543184 AATATTCAATAATTTCGGTGCACAAGTTGCTGCATTTGACAGTGCCTATATGTTGATGAT 2543125 Query 47983 T--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 | ||| ||| || || |||||||||||| |||||||||||||||||| || Sbjct 2543124 TCGATTTTCG--GTTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTG 2543067 Query 48041 AGAT 48044 ||| Sbjct 2543066 GGAT 2543063 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 ||||||| || |||||||| |||||||| ||| || |||| |||||| ||||| || Sbjct 2544232 ATATGAACGTTTAGAGATTGTGACTGATCAACAAAAGCTCCTCGATCAGCCGCCATTTCA 2544173 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 | ||| || |||| ||||||||||| ||||| || |||| Sbjct 2544172 AGAATTACTTTTTGCGGTATCTCCCAGACTGTCTTGTAAA 2544133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562078312623960