Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3806 125 2e-23 seq3660 125 2e-23 seq3043 95.1 3e-14 >seq3806 Length=402996 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| |||||| | ||||| ||| ||||| ||| | ||| Sbjct 2566 AAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCTGATACAATAGAAAAC 2625 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| ||||| |||||||| ||| || ||| ||| || | ||||| Sbjct 2626 GTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAACGATTGATCTTT 2685 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || |||||||||||||| ||||| | | || || ||| ||||||| || || Sbjct 2686 GCTGGTAAACAGTTGGAAGATGGTAGGACACTTTCAGACTATAACATCCAGAAGGAATCC 2745 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || ||| || | |||||| Sbjct 2746 ACGCTTCATCTGGTTCTGCGTCTTCGA 2772 >seq3660 Length=1598725 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| || || |||| || || ||| ||| Sbjct 289962 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCAGAC 289903 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| || ||||| || |||||||| ||| || || ||| Sbjct 289902 ACGATCGAAAACGTGAAGGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAACAA 289843 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || ||||| || |||||| | || |||||| ||||||| | || || || | Sbjct 289842 AGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCAGACTATAATATT 289783 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| ||||| ||||||||||| | ||||| || Sbjct 289782 CAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 289744 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||| | ||||||||||| ||||| |||||||| | ||||||||| | ||||| Sbjct 289744 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCTGATAAAGT 289803 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||| || |||||||| || ||||| || || | ||||||| Sbjct 289804 CCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGA 289849 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || |||||||| || ||||| |||||||| || || ||||| | || Sbjct 290407 CAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCAGACACTATTGAGAA 290348 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| ||||||||||| |||||| || || | ||||| Sbjct 290347 TGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAGCAGAGGTTGATCTT 290288 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || | ||||| || | || | | || ||||| | ||||| || || Sbjct 290287 CGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAATATTCAGAAGGAATC 290228 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || | || | |||||||| ||||| Sbjct 290227 CACATTGCATTTGGTTTTGAGGCTTCG 290201 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || |||||||| || ||||| |||||||| || || ||||| | || Sbjct 290635 CAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCAGACACTATTGAGAA 290576 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| ||||||||||| |||||| || || | ||||| Sbjct 290575 TGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAGCAGAGGTTGATCTT 290516 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || | ||||| || | || | | ||||||||| | || || || || Sbjct 290515 CGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACAACATTCAAAAGGAATC 290456 Query 206364 TAC 206366 ||| Sbjct 290455 TAC 290453 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || |||||||| || ||||| |||||||| || || ||| Sbjct 291102 CAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCAGAC 291043 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| ||||||||||| || || || Sbjct 291042 ACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAGCAG 290983 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||| ||||| || | ||||| || | || | | || ||||| | Sbjct 290982 AGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAATATT 290923 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 290922 CAGAAAGAATCCAC 290909 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| ||||| |||| || ||| ||| || Sbjct 290190 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCAGAT 290131 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| ||||| || || ||||| || ||||| || Sbjct 290130 ACGATCGAGAATGTCAAAGCTAAA-ATTCAGGACAAGGAAGGTATCCCACCGGATCAGCA 290072 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | |||||||||||||| || | ||||| || | || | | || ||||| | Sbjct 290071 GAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAATAT 290012 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || | || | |||||||| ||||| Sbjct 290011 TCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCG 289973 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || ||| | ||||| || ||||||||| | || ||||| | Sbjct 291309 ACGGGGAAGACCATAACTCTTGAAGTTGAGGCTTCTGACACTATTGAGAATGTAAAAGCA 291250 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || || || || | | ||||| ||||||||| Sbjct 291249 AAGATCCAGGATAAGGAAGGTATCCCACCTGATCAGCAGCGTTTGATCTTTGCCGGAAAG 291190 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | |||||| | |||||||| | ||||| || || ||||| || Sbjct 291189 CAGCTGGAAGATGGACGTACTTTGTCTGATTACAATATTCAGAAGGAATCCACTCTCCAT 291130 Query 206374 CTTGTTTTGAGA 206385 | ||| | ||| Sbjct 291129 TTAGTTCTCAGA 291118 >seq3043 Length=1629123 Score = 95.1 bits (104), Expect = 3e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | || || || ||||| || |||| Sbjct 1067871 AAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCTGATACTATCGAGAAT 1067930 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| ||| || || |||| |||||| Sbjct 1067931 GTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAACAGCGACTCATCTTC 1067990 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||||| || ||| |||| |||||| | |||||| ||||||||||| |||| |||| Sbjct 1067991 GCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAACATCCAAAAAG 1068045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181755098519219