Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3806 122 8e-23 seq3660 100 3e-16 seq3043 84.2 2e-11 >seq3806 Length=402996 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | || || ||||||| ||||| Sbjct 3235 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTCA 3294 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||||| || |||||||| || || || ||||| Sbjct 3295 GATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCAA 3354 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || |||||||||||| ||||||| |||| | | |||||||| Sbjct 3355 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 3414 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| | || ||||| ||| || | | ||||| Sbjct 3415 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 3461 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| | || || ||| | || || | ||||||||||| Sbjct 2322 CATGCAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTC 2381 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| || |||||||| || || || ||||| Sbjct 2382 GGACACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCGGATCA 2441 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| | ||||| ||||| ||||||| |||| | || ||||| || Sbjct 2442 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAA 2501 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||||||| |||| || || Sbjct 2502 TATTCAAAAAGAATCCACACTTCACTTGGT 2531 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | || || ||||||| ||||| Sbjct 3007 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTCA 3066 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||||| || |||||||| || || || ||||| Sbjct 3067 GATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCAA 3126 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || |||||||||||| ||||||| |||| | | |||||||| Sbjct 3127 CAGCGTCTGATTTTCGCCGGCAAACAACTAGAAGATGGCAGAACTCTTTCTGATTACAAC 3186 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||||||||| |||| | || || | | ||||||||| Sbjct 3187 ATTCAGAAAGAATCCACGCTTCACCTGGTTTTGCGTCTTCGAGGAGGAA 3235 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | ||||| | ||||| |||||| Sbjct 2779 ATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCT 2838 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| || || || ||||| || || || || || ||| Sbjct 2839 GACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 2898 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || |||||| | ||||| | ||| | || || || || Sbjct 2899 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATAAC 2958 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| ||| ||||||| || Sbjct 2959 ATTCAAAAAGAATCTACCCTTCATTTGGT 2987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | ||||||||||| | || |||||| | || || | || || ||||| Sbjct 2091 CATCATGCAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGC 2150 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||||||| | || ||| || || || ||||| ||||| || || || Sbjct 2151 TTCTGATACTATCGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 2210 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||| | | || | | || || ||| | || |||| |||| | | || || Sbjct 2211 TCAGCAACGTTTGATCTTTGCTGGAAAGCAATTAGAGGATGGCAGAACTCTTTCTGACTA 2270 Query 25351 CAATATTCAAAAAGAATCCACCATTCAT 25378 ||| || || || ||||| || ||||| Sbjct 2271 CAACATCCAGAAGGAATCTACGCTTCAT 2298 >seq3660 Length=1598725 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || ||| | |||||| | || |||||||| Sbjct 290193 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCA 290134 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || ||| |||||| || || || ||||| || || |||||| Sbjct 290133 GATACGATCGAGAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCACCGGATCAG 290074 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||| |||||||| ||||| | | | | || |||||| Sbjct 290073 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAAT 290014 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||| || |||||||| | ||||| || || || Sbjct 290013 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAG 289979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || || ||||| || || || | || || | ||||| || || Sbjct 291337 CACCATGCAGATTTTCGTGAAGACATTGACGGGGAAGACCATAACTCTTGAAGTTGAGGC 291278 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||| ||| | |||||| ||| || ||||| || ||||| || || || Sbjct 291277 TTCTGACACTATTGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGTATCCCACCTGA 291218 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||| | | || | | ||| || || || ||||||| | | | | ||||| Sbjct 291217 TCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTA 291158 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||| || |||||||| | |||||||| | |||||| | || |||| Sbjct 291157 CAATATTCAGAAGGAATCCACTCTCCATTTAGTTCTCAGATTGCGTGGTGGAA 291105 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || ||||| | |||||| | ||||| || || Sbjct 290877 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 290818 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || |||||| || ||||| || || || || |||||| Sbjct 290817 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 290758 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || || |||||||| ||||| | | | | || |||||| Sbjct 290757 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAAT 290698 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||||||||| | ||||| || Sbjct 290697 ATTCAGAAAGAATCCACATTGCATTTGGT 290669 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || ||||| | |||||| | ||||| || || Sbjct 291105 ATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 291046 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || |||||| || ||||| || || || || |||||| Sbjct 291045 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 290986 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || || |||||||| ||||| | | | | || |||||| Sbjct 290985 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAAT 290926 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||||||||| | ||||| || Sbjct 290925 ATTCAGAAAGAATCCACATTGCATTTGGT 290897 >seq3043 Length=1629123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || ||||| | || || ||| | || || |||| || || || Sbjct 1067852 CACCATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGC 1067911 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | |||||||||||| | || || || || || || ||||| || ||||| || Sbjct 1067912 CTCTGATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGA 1067971 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || ||||||| | || ||||||||| || || |||| | | | | |||||| Sbjct 1067972 TCAACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTA 1068031 Query 25351 CAATATTCAAAAAG 25364 ||| || ||||||| Sbjct 1068032 CAACATCCAAAAAG 1068045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445070259192480