Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3641 95.1 2e-14 seq2857 93.3 6e-14 seq3719 87.8 2e-12 >seq3641 Length=2987713 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 |||||| ||| || | ||||||||| || || |||||| ||||| || || | | Sbjct 2543946 GTTAAATCTCGCAGTAAATGCGGATTGACAATAATAAATTCTCCAGACAATACGCGCCTC 2543887 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 || ||||| || ||||| ||||| | ||||| ||||| || | ||| || || || Sbjct 2543886 ACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCTGTC 2543827 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || || |||||||||||||| | || | | |||||| | || || | ||| || Sbjct 2543826 GAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCCGTGCTTCGCGATCTTC 2543767 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 | || | | | ||||||||| | || | ||| ||| ||||| | ||| ||||| Sbjct 2543766 GCCTTCAATTCATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGG 2543707 Query 68926 AGAAT 68930 ||||| Sbjct 2543706 AGAAT 2543702 Score = 89.7 bits (98), Expect = 7e-13 Identities = 178/264 (67%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||| | || ||||| || |||| |||| | |||||||||| || || || || | Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 | || || || ||| || | ||| |||||||| || || || |||| | Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATATTATTTT 2542143 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 |||||| || | || || | |||||||||||| ||||| | || || | ||| || Sbjct 2542142 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 2542083 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | ||||||| |||||| | | || || |||||||| |||| ||| || || |||| Sbjct 2542082 TGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGT 2542023 Query 70202 CTCTTTCGTAAATAATAACAGAAT 70225 | | || || || ||| | |||| Sbjct 2542022 CACGATCATATATTATAGCGGAAT 2541999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||||||||||||||||||| || |||||| |||||| ||||||||| | |||| Sbjct 2542885 AATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGACACATTAGGCTCCAC 2542826 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 | || |||| | || |||| |||||| ||||| || ||||| ||| Sbjct 2542825 ATCTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGA 2542778 >seq2857 Length=5407 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| |||||||||| | | ||||| || ||||||||||| ||||| | ||| Sbjct 4333 TTTTCAAATCCTAATGCAACGAATAATCTGTCCGCAACAAATTCGATGTAGTTACACATG 4392 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | | | |||||||||||| |||| ||| || | || | ||| | ||| || ||||| Sbjct 4393 AATGTGCGATTCATTCCTATTAGTTCAACCGGCAACGCTTGCGTCAAAAATTCCTTTTCA 4452 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG---ATGCAAT 39598 || |||||||| || ||| || ||| | || || ||| || ||| || | Sbjct 4453 ATTTCTACGGCGTCCATTACAATTGATTTCAC-AC--GCTCAAACGATGGCTTTTGTACG 4509 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | |||||||||||||| |||||||| || || |||| |||| Sbjct 4510 ATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCCCT 4552 >seq3719 Length=734917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| |||||| | ||| |||||||||||||||| ||||||||| | Sbjct 302936 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGACACATTAGACT 302877 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||| || |||||||| ||| |||||||| |||| || ||| |||| Sbjct 302876 CCATACGTCATCATCAAAAACGCGTTTCATGAATAAATTTGGAGTCCA 302829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686871543783960