Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3306 111 1e-19 seq3973 107 2e-18 seq4330 91.5 1e-13 >seq3306 Length=2425807 Score = 111 bits (122), Expect = 1e-19 Identities = 200/290 (69%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| |||||||||| | || ||||| ||||| |||| || |||||| Sbjct 1083835 ATTGGTGGCTTGGATAAAGAGTTTAGCGCCATTTTTCGAAGAGCCTTTGCATCCCGTGTT 1083776 Query 19303 TTTTCTGCAGA---TGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTT 19359 || | | || ||||| | |||||||| || || ||||| ||| | ||| | Sbjct 1083775 TTCCCAACGGAGATTGTCACT---CAATTGGGTTGCAAGCATGTAAAAGGAATCTTGTTG 1083719 Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| ||||| ||| ||||| || ||||| || | || | ||| | ||| | Sbjct 1083718 TATGGACCACCTGGTACAGGAAAGACGTTAATGGCTCGGCAAATAGGTACAATGTTAAAT 1083659 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| |||| ||||||||||||||||| |||| || |||||||||| || || Sbjct 1083658 GCAAGGGAACCG---AAAATTGTAAATGGTCCACAAATTTTGGATAAATATGTTGGAGAA 1083602 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 || | ||| | || | ||||| ||||| || ||||||||| |||| Sbjct 1083601 AGCGAGGCTAATATCAGAAGATTGTTCGCTGAAGCAGAAGAAGAAGAAAA 1083552 >seq3973 Length=340871 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||| ||||| ||| || || || || ||||| || ||| || || || ||| Sbjct 492 GAGAAACGCTTTATCTCTCATGTCTTAGCATTCTTTGCCGCTTCCGATGGTATCGTTAAT 433 Query 43889 GAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 || ||| || || || | || |||||||| || | || |||||||| ||||| || Sbjct 432 GAGAATCTGATTGAGAAATTCAGC-CAAGAAGTGAAAATTCCCGAAGCACGTTGTTTCTA 374 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| ||||||||||||||||||||||||||||| || |||||| | | || || || || Sbjct 373 TGGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTACTCTTTGCTCATTGAAAC 314 Query 44008 GTACAT 44013 || || Sbjct 313 TTATAT 308 >seq4330 Length=3992391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||| ||| | | || ||||| || | || | | |||||||||||| || | Sbjct 1171882 GACGTATTATAATATCAGCCTGGAATCCGATTGATATTCCAAAGATGGCATTGCCGCCGT 1171823 Query 41065 GTCA---TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATC 41121 |||| |||| || || |||||||| || || ||| |||| ||| | |||| Sbjct 1171822 GTCACACTTTGGTA---CAATTTTACGTAAATAACGGAGAATTGTCCACGCAACTTTATC 1171766 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 ||||| | |||||||| |||| || ||||||||||||||| ||| || |||| | Sbjct 1171765 AAAGAAGCGCAGACATGGGTTTAGGAGTGCCGTTTAACATAGCGTCATATTCTTTGCTGA 1171706 Query 41182 CGTATATGATTGCACACGTTAC 41203 | || ||||| || || ||||| Sbjct 1171705 CTTACATGATCGCTCATGTTAC 1171684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397434981905695