Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3806 143 2e-29 seq3641 143 2e-29 seq3660 114 1e-20 seq3043 104 2e-17 >seq3806 Length=402996 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| |||| || | ||| || ||||| ||||| ||||| || Sbjct 3233 CCTCCTCGAAGACGCAAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAA 3174 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| || ||||| |||||| |||| ||||||||||||||||| || Sbjct 3173 AGAGTTCTGC-CATCTTCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3115 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || ||| ||| |||| | |||| | || |||| |||||||| Sbjct 3114 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAAC 3055 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || ||||||||||| ||||||||||| Sbjct 3054 TTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3007 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || || || || || | || || |||||||| || ||||| || Sbjct 3461 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 3402 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| || ||||| |||||| |||| ||||||||||||||||| || Sbjct 3401 AGAGTTCTGC-CATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3343 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || ||| ||| |||| | |||| | || |||| |||||||| Sbjct 3342 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAAC 3283 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || ||||||||||| ||||||||||| Sbjct 3282 TTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3235 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||||||| | ||||| ||||||||||| || ||||| Sbjct 3005 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAG 2946 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||||||| | |||||||| || |||| | ||| || || || || || Sbjct 2945 AGTGTCCTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 2886 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| ||| | | |||||| ||||| | |||||||||| Sbjct 2885 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 2826 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || || ||||||||||| ||||||||||| Sbjct 2825 TCAAGAGTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTGCAT 2779 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||||| || | || || |||||||||||||| || || | Sbjct 2549 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 2490 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || | ||||| || || || || || |||| |||||||| |||||||| || Sbjct 2489 AGAGTTCTGC-CATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGG 2431 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || || ||| ||||| |||| | ||||| | ||||| || Sbjct 2430 AATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGAC 2371 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| ||||| |||||||| |||||||| ||||| Sbjct 2370 TTCAAGGGTAATGGTTTTACCCGTAAGAGTTTTTACAAAGATCTGCAT 2323 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | ||| || || || || || || ||||| | Sbjct 2777 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCCTTCTGGATGTTATAGTC--TG 2720 Query 27081 ATGTTGCGCT--CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | || || | ||||| | ||||||||| || | || | || || || || || | Sbjct 2719 AAAGTGTCCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAG 2660 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || |||||| ||| | | |||||| || || | |||||||| Sbjct 2659 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTATCAGAGGCTTCAA 2600 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| || | ||| || || ||||||||||| ||||||||||| Sbjct 2599 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 2551 >seq3641 Length=2987713 Score = 143 bits (158), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824 ||| || |||| || ||||| || || || || ||||| || ||||||||| |||||| Sbjct 2543911 AAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTC 2543852 Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATT 130884 ||| || || || || |||||||| | || || ||||| ||| | ||| |||||||| Sbjct 2543851 GTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATT 2543792 Query 130885 ACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGG 130944 | | |||||| ||| ||| || ||||||||||||||||||||||| | || || Sbjct 2543791 TCTTACTCCGTGCTTCGCGATCTTCGCCTTCAATTCATCCCAATCCCATAAATTTGTCGG 2543732 Query 130945 TTTGACATTGTTCCACATATCAAATTGTAGTAT 130977 ||| || ||||||||||||| |||| || || Sbjct 2543731 TTTAAC---GTTCCACATATCATATTGGAGAAT 2543702 >seq3660 Length=1598725 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || ||| |||||||| || || || || || |||||||||||||| Sbjct 290195 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290254 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||| ||||||| || ||||| |||||| | || | | ||| || ||||| || Sbjct 290255 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 290314 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || ||| || | | || | |||||||| || |||||| Sbjct 290315 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACT 290374 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| || || ||||||||||| || || ||||||||| Sbjct 290375 TCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCATA 290422 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || ||| |||||||| || || || || || |||||||||||||| Sbjct 289967 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290026 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||| ||||||| || ||||| |||||| | || | | ||| |||||||| || Sbjct 290027 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 290086 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || || || ||| | | || | || |||| ||||| || Sbjct 290087 ATACCTTCCTTGTCCTGAATTTTAGCTTTGACATTCTCGATCGTATCTGAAGCTTCGACC 290146 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||| || || |||||||| ||||| || |||||| Sbjct 290147 TCCAGCGTGATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCATA 290194 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| | | || ||||| | || || || || ||||||||||| || | Sbjct 291107 CCACCACGCAATCTGAGAACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 291166 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| ||||| || ||||| | || | |||||| ||||| || || Sbjct 291167 AAAGTACGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGG 291226 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| |||||| ||| | | || | |||||| | || |||||| Sbjct 291227 ATACCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACT 291286 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | || ||||||| || ||||| || || ||||| Sbjct 291287 TCAAGAGTTATGGTCTTCCCCGTCAATGTCTTCACGAAAATCTGCAT 291333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| || ||||| || |||||||| ||||| || | | || ||||||| Sbjct 290441 ACCAGATGCAAGGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCTTCA 290500 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| |||||| | || | | ||| || ||||| || | || ||||| || Sbjct 290501 AGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGA 290560 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | || | |||||||| || |||||||| | || |||| || Sbjct 290561 ATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAACTTCCAATGTGATAGTCTTT 290620 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||||||||| || || ||||||||| Sbjct 290621 CCTGTCAGAGTTTTGACGAAAATTTGCATA 290650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | |||||||| || || || ||||| |||||||||||||| Sbjct 290651 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 290710 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| || ||||| || ||| | || | | ||| ||||| || || Sbjct 290711 AGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGG 290770 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || ||| || | | || | ||||||| || |||||| Sbjct 290771 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACT 290830 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || ||||||||||| || || ||||||||| Sbjct 290831 TCCAACGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCATA 290878 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | |||||||| || || || ||||| |||||||||||||| Sbjct 290879 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 290938 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| || ||||| || ||| | || | | ||| ||||| || || Sbjct 290939 AGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGG 290998 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || ||| || | | || | ||||||| || |||||| Sbjct 290999 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGACGCCTCAACT 291058 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || ||||| ||||| |||||||| ||||| Sbjct 291059 TCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 291105 >seq3043 Length=1629123 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 ||||||| || ||||| ||| || |||| | || || |||||||| |||||| | | Sbjct 1068045 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1067986 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||| ||||||||||| ||||| | ||||| || || |||||| || | | | Sbjct 1067985 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 1067926 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||| || | ||| || || || || || || | ||| ||||| || |||||||| | Sbjct 1067925 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGA 1067866 Query 27238 AGATTTGCAT 27247 |||| ||||| Sbjct 1067865 AGATCTGCAT 1067856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424911928804968