Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3806 172 6e-38 seq3660 136 5e-27 seq3043 114 1e-20 >seq3806 Length=402996 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| || || || ||||| ||||| || || | Sbjct 2323 ATGCAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTCG 2382 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| |||| || |||||||| ||||| ||||||||||| || || ||| Sbjct 2383 GACACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCGGATCAG 2442 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| |||||||| || |||| | || || | || |||||| Sbjct 2443 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAAT 2502 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| |||||||| ||||| | || | |||||||| || ||| Sbjct 2503 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGA 2550 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || ||||| || || || |||||||| ||||| | Sbjct 2550 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2609 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || ||||| || || ||||| || || |||||||| ||||| Sbjct 2610 TGATACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 2669 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || | || ||||||||||| || | || |||| | | || || |||||||||| Sbjct 2670 GCAACGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGGACACTTTCAGACTATAA 2729 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||||||||| |||||||| || |||||||||| || ||| Sbjct 2730 CATCCAGAAGGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGGA 2778 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||||||||| || || || || || || || ||||| |||||||| || | Sbjct 2092 ATCATGCAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGCT 2151 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| || | ||| | || ||||| || || ||||| || || ||||||||||| Sbjct 2152 TCTGATACTATCGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGAT 2211 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||| | || |||||||| |||||| | ||||||| | || || | ||||| Sbjct 2212 CAGCAACGTTTGATCTTTGCTGGAAAGCAATTAGAGGATGGCAGAACTCTTTCTGACTAC 2271 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| |||||||| || |||||||| || |||||||||| || || Sbjct 2272 AACATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTTCGTGGAGG 2321 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || |||||||| || || || |||||||| ||||| | Sbjct 2778 AATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2837 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | || ||||| || || ||||| || || |||||||| ||||| Sbjct 2838 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 2897 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | |||||||||||||| ||| | || || | | | || || | |||||||| Sbjct 2898 GCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATAA 2957 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| || |||||| | || |||||||||| || ||| Sbjct 2958 CATTCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGGA 3006 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || ||||| || || ||||| || || ||||| | Sbjct 3006 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3065 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| ||||||| ||||| |||||||| ||||||||||| || || || Sbjct 3066 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3125 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| ||||| || || || ||||| || |||| | || || | || || || Sbjct 3126 ACAGCGTCTGATTTTCGCCGGCAAACAACTAGAAGATGGCAGAACTCTTTCTGATTACAA 3185 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || |||||||| ||||| || || ||||||||||| || ||| Sbjct 3186 CATTCAGAAAGAATCCACGCTTCACCTGGTTTTGCGTCTTCGAGGAGGA 3234 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || ||||| || || ||||| || || ||||| | Sbjct 3234 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3293 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| ||||||| ||||| |||||||| ||||||||||| || || || Sbjct 3294 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3353 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| ||||| || || || ||||| || |||| | || || | || || || Sbjct 3354 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3413 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| || || |||| || || |||||||| || Sbjct 3414 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 3461 >seq3660 Length=1598725 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || || || || || |||||||| || ||||| ||| | Sbjct 289965 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 289906 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| ||||||||||| || || || |||||||| || || Sbjct 289905 GACACGATCGAAAACGTGAAGGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAA 289846 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| || || ||||| || ||||||| || || || ||||||||||| Sbjct 289845 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCAGACTATAAT 289786 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || ||||| || ||||| || || | || ||| | || ||| Sbjct 289785 ATTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGA 289738 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || | || |||||| | Sbjct 290421 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290362 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| |||||||| ||||| || ||||| || || |||||| Sbjct 290361 GACACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAG 290302 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || ||||| || || | ||||| || | ||||| ||| Sbjct 290301 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAAT 290242 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| | ||| | || ||| | ||||||||||| Sbjct 290241 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGG 290195 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || || || || || ||||| || || ||||| || | Sbjct 290193 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCA 290134 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || |||||||||||||||||||| || || || || || ||| Sbjct 290133 GATACGATCGAGAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCACCGGATCAG 290074 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || ||||| || || | ||||| || | ||||| ||| Sbjct 290073 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAAT 290014 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| | ||| | || ||| | ||||||||||| Sbjct 290013 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGG 289967 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || | || |||||| | Sbjct 290649 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290590 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| |||||||| ||||| || ||||| || || |||||| Sbjct 290589 GACACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAG 290530 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || ||||| || || | |||||| || | || || || Sbjct 290529 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACAAC 290470 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | ||||| ||| | ||||| || ||||| Sbjct 290469 ATTCAAAAGGAATCTACCTTGCATCTGGTCCTTCGTCTACGTGGTGG 290423 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| || |||||||| |||||| | | Sbjct 291333 ATGCAGATTTTCGTGAAGACATTGACGGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 291274 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || || || || ||||| ||||| || || || || || ||| Sbjct 291273 GACACTATTGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGTATCCCACCTGATCAG 291214 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || ||||| || || |||| ||||| | | || || ||| Sbjct 291213 CAGCGTTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 291154 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || |||||||||||||| ||| |||| Sbjct 291153 ATTCAGAAGGAATCCACTCTCCATTTAGT 291125 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || || || || ||||| || || | || |||||| | Sbjct 291106 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 291047 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| |||||||| ||||| || ||||| || ||||| || Sbjct 291046 AGACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 290987 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || || ||||| || ||||| || || | ||||| || | ||||| || Sbjct 290986 GCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAA 290927 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || |||||||| | ||| | || | ||| | || ||||| Sbjct 290926 TATTCAGAAAGAATCCACATTGCATTTGGTTCTCCGTTTACGTGGTGG 290879 >seq3043 Length=1629123 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || || || ||||| || ||||| ||| | | Sbjct 1067856 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 1067915 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | |||||||| || |||||||||||||||||||| ||||| || Sbjct 1067916 GATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 1067975 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || || || || ||||||| || || | | || || || Sbjct 1067976 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 1068035 Query 27586 GTCCAAAA 27593 ||||||| Sbjct 1068036 ATCCAAAA 1068043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570279467789680