Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3806 131 1e-25 seq3660 123 2e-23 >seq3806 Length=402996 Score = 131 bits (144), Expect = 1e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||| | ||||| || || ||| || |||||||| |||||||| || Sbjct 2549 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 2490 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||||||||| || || ||||| || | |||||| || ||||| || Sbjct 2489 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 2430 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGT-CTTCGCTCTCCA 34657 | |||||| |||||| ||| ||| | ||| || | ||| |||| | ||| || | Sbjct 2429 ATTCCCTCTTTGTCT-TGAATTTTGGCTTTCACATTTTCAATGGTGTCCGAAGCT-TCGA 2372 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || |||||||| || | ||||| ||||| ||||||||| Sbjct 2371 CTTCAAGGGTAATGGTTTTACCCGTAAGAGTTTTTACAAAGATCTGCATG 2322 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||||||| || || || |||||||||||||| || || Sbjct 3005 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAG 2946 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | ||||||| | ||||||||| ||||| || ||||| || ||||| || || Sbjct 2945 AGTGTCCTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 2886 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| |||||| ||||| | |||||||| | || ||| Sbjct 2885 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 2826 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| | |||||||| || || ||||| Sbjct 2825 TCAAGAGTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTGCAT 2779 Score = 129 bits (142), Expect = 4e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||||| |||| || || ||| || || |||||||| ||||| ||| Sbjct 3233 CCTCCTCGAAGACGCAAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAA 3174 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| ||||| || || | ||||||||| ||||| || Sbjct 3173 AGAGTTCTGCCATCTTCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3114 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | |||||| ||||| ||| ||| | || ||| | || || ||| ||| || | Sbjct 3113 ATTCCCTCTTTGTCCTGGAT-TTTGGCCTTCACGTTTTCGATGGTATCTGAAGCT-TCAA 3056 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | |||||||| || || ||||| Sbjct 3055 CTTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3007 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || || || || ||||| ||| || ||||| ||||| ||||| ||| Sbjct 3461 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 3402 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| ||||| || || | ||||||||| ||||| || Sbjct 3401 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3342 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | |||||| ||||| ||| ||| | || ||| | || || ||| ||| || | Sbjct 3341 ATTCCCTCTTTGTCCTGGAT-TTTGGCCTTCACGTTTTCGATGGTATCTGAAGCT-TCAA 3284 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | |||||||| || || ||||| Sbjct 3283 CTTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3235 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| ||||| || |||||||| |||||| Sbjct 2777 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCCTTCTGGATGTTATAGTCTGAA 2718 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | | ||||| | |||||||| ||||| || || || || ||||| || || Sbjct 2717 AGTGTCCTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGA 2658 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| |||||| ||||| | ||||| || | || ||| Sbjct 2657 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTATCAGAGGCTTCAACT 2598 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| | |||||||| || || ||||| Sbjct 2597 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 2551 >seq3660 Length=1598725 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| |||||||| | ||| ||||| ||||| || || || ||| Sbjct 290195 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290254 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| |||||||||||||||| ||||| || || || | ||| |||||||| || Sbjct 290255 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 290314 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || |||||| ||| ||| | || || | ||| |||||| ||| ||| | Sbjct 290315 ATTCCTTCTTTGTCT-TGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGC-CTCAA 290372 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | ||||| || ||||| ||||| Sbjct 290373 CTTCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290421 Score = 122 bits (134), Expect = 5e-23 Identities = 146/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| ||||| |||||||| || |||||||||||||||| ||||| || Sbjct 290459 TCCTTTTGAATGTTGTAATCAGAAAGTGTACGACCGTCTTCAAGTTGTTTTCCGGCGAAG 290518 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||| |||||||| || | ||| || |||||| ||| ||| | || || | Sbjct 290519 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCT-TGAATTTTGGCCTTGACATT 290577 Query 34636 -AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 ||| |||||| ||| ||| ||||||| || || || || || || | ||||| | Sbjct 290578 CTCAATAGTGTCTGACGC-CTCAACTTCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGA 290636 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 290637 CGAAAATTTGCAT 290649 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| |||||||| | ||| ||||| ||||| || || || ||| Sbjct 289967 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290026 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| |||||||||||||||| ||||| || || || | ||| || ||||| || Sbjct 290027 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 290086 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | || |||||||| ||| ||| | ||| || | || || ||| ||| || | Sbjct 290087 ATACCTTCCTTGTC-CTGAATTTTAGCTTTGACATTCTCGATCGTATCTGAAGCT-TCGA 290144 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || |||||||| || | ||||| |||||||||||||| Sbjct 290145 CCTCCAGCGTGATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 290193 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || |||||||||||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 291125 ACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 291184 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || |||||||| || |||||||| || || || || | || ||||| || | Sbjct 291185 AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGGATACCTTCCTTATCCTGG 291244 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 |||||| ||||| ||| ||||| ||| ||||| | ||||| || || Sbjct 291245 ATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 291304 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || ||||| |||||||||||| || Sbjct 291305 CCCGTCAATGTCTTCACGAAAATCTGCATGGTG 291337 Score = 91.5 bits (100), Expect = 9e-14 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | ||| || || ||||| || || || ||||| || || |||||||| Sbjct 290897 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCA 290956 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| || || || || || | ||| || || || || | ||| || |||||| || Sbjct 290957 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT-TG 291015 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | || || | || |||||| ||| ||| ||||||| || || || | Sbjct 291016 AATTTTGGCCTTGACATTCTCGATCGTGTCTGACGC-CTCAACTTCCAACGTGATGGTCT 291074 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| ||||| |||||||| Sbjct 291075 TTCCTGTCAGGGTTTTGACAAAGATCTGCAT 291105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | ||| || || ||||| || || || ||||| || || |||||||| Sbjct 290669 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGCGTACGGCCGTCTTCA 290728 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| || || || || || | ||| || || || || | ||| || |||||| || Sbjct 290729 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT-TG 290787 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | || || | || |||||| ||| ||| ||||||| || || || | Sbjct 290788 AATTTTGGCCTTGACATTCTCGATCGTGTCTGACGC-CTCAACTTCCAACGTGATGGTCT 290846 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| || ||||| ||||| Sbjct 290847 TTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314712956606987