Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3660 104 2e-17 seq3806 100 2e-16 >seq3660 Length=1598725 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||||| ||||| ||| ||| || | || |||||| | Sbjct 290193 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCA 290134 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| |||||| ||||| ||||| |||||| | || ||| | Sbjct 290133 GATACGATCGAGAAT--GTCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCACCGGATC 290076 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||||||| | || |||| || | | || || |||| Sbjct 290075 AGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACA 290016 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 | || || || || ||| ||||||||||||||| Sbjct 290015 ATATTCAGAAGGAATCCACATTGCATTTGGTTTTG 289981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||||| || || || ||| ||| | || || || | Sbjct 290649 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290590 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| ||||| ||||| ||||||||||| | || ||| | Sbjct 290589 GACACTATTGAGAAT--GTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACC 290532 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||||||| | || |||| || | | || ||||||| Sbjct 290531 AGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACA 290472 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || || |||||| |||| | ||| | ||||| || Sbjct 290471 ACATTCAAAAGGAATCTACCTTGCATCTGGTCCTTCGTCTACGTGGTGG 290423 >seq3806 Length=402996 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || |||||||||||||| || ||| || || |||| || ||| | | Sbjct 2778 AATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2837 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| || || ||||||||||| |||| || || Sbjct 2838 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 2897 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || |||||||| || ||||||||||| |||| | | | || || || || Sbjct 2898 GCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATAA 2957 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| |||||||| || | ||||||||| ||||| | || || || Sbjct 2958 CATTCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGG 3005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| ||||| ||| ||||| |||| || ||| | Sbjct 2095 ATGCAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGCTTCT 2154 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || || |||||||||||| |||| || | Sbjct 2155 GATACTATCGAGAAT--GTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATC 2212 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 ||||||| || || ||||| ||||| ||||| || || | |||| || | || || | Sbjct 2213 AGCAACGTTTGATCTTTGCTGGAAAGCAATTAGAGGATG---GCAGAACTCTTTCTGACT 2269 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || || || | ||| | ||| ||||| | ||||| ||| Sbjct 2270 ACAACATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTTCGTGGAGGC 2322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355843581440253