Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3806 179 9e-40 seq3660 156 1e-32 seq3043 149 1e-30 >seq3806 Length=402996 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || ||||| ||||| || || ||||||||||| || | ||| ||| Sbjct 2771 CGAAGACGCAGAACCAGATGAAGCGTGGATTCCTTCTGGATGTTATAGTCTGAAAGTGTC 2712 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||||| ||| || || || ||||| | ||||| ||||||||||||| ||| Sbjct 2711 CTACCATCTTCCAACTGTTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGAATGCCT 2652 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||| |||||||| || || |||||| |||||| || ||| Sbjct 2651 TCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGA 2592 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || |||||||| || || || | |||||| Sbjct 2591 GTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 2550 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| || Sbjct 3455 CGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT 3396 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| || ||||| ||||| || || || ||||| || || |||| ||| Sbjct 3395 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCC 3336 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || ||||||||||||||||| || || |||||| ||||| Sbjct 3335 TCTTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGG 3276 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || |||||||| || || || | |||||| Sbjct 3275 GTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3234 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || |||||||| ||||| ||||| || ||||| ||||| | ||| || || |||||||| Sbjct 3215 ACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCTTCT 3156 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || || ||||| ||||| || || || ||||| || || |||| ||| || ||||||||| Sbjct 3155 AGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGG 3096 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||||||||||||||| || || |||||| ||||| || || || || Sbjct 3095 ATTTTGGCCTTCACGTTTTCGATGGTATCTGAAGCTTCAACTTCGAGGGTAATTGTTTTA 3036 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||| || || || | |||||| Sbjct 3035 CCGGTGAGAGTTTTCACGAAGATTTGCATT 3006 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||||| || || |||||||| |||||||| |||| || ||| Sbjct 2999 CGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCCGAGAGTGTC 2940 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||||| || || || || || || | ||||| ||||||||||||| ||| Sbjct 2939 CTACCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCT 2880 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||| |||||||| || ||||||||| |||||| || ||| Sbjct 2879 TCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGA 2820 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || ||||| || || || | |||||| Sbjct 2819 GTGATGGTTTTACCGGTAAGAGTTTTCACGAAGATTTGCATT 2778 >seq3660 Length=1598725 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || ||||||||||| || || ||||| || || ||||| || | | |||| Sbjct 289747 AAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCTGATAAAGTCCG 289806 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| || ||||||||||| ||||| || || | |||||| || ||||||| ||||| Sbjct 289807 TCCATCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTC 289866 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || ||||| || || |||||||||||||| ||||| || || ||||| || || Sbjct 289867 TTTATCCTGAATTTTCGCCTTCACGTTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGT 289926 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || ||||| | |||||| Sbjct 289927 AATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 289965 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | ||| || || | || |||||||| || || || || || ||||| | | || Sbjct 291112 ACGCAATCTGAGAACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAAGT 291171 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||||||||| || || ||||| | || || || ||||| || | || Sbjct 291172 ACGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCAGGTGGGATACC 291231 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| |||||||||||| ||| || || || || |||||||| ||||| || || Sbjct 291232 TTCCTTATCCTGGATCTTTGCTTTTACATTCTCAATAGTGTCAGAAGCCTCAACTTCAAG 291291 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| ||||| | ||||| || || | |||||| Sbjct 291292 AGTTATGGTCTTCCCCGTCAATGTCTTCACGAAAATCTGCAT 291333 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || || || || || || || | ||| || | || ||||| || || || || Sbjct 289997 GTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGCCCGTCTTCAAGTTGTTTTCCG 290056 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || || || || || | |||||||||||||| || || ||| Sbjct 290057 GCGAAGATCAACCTCTGCTGATCCGGTGGGATACCTTCCTTGTCCTGAATTTTAGCTTTG 290116 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| || || || ||| ||||| || ||||| || || || |||||||| Sbjct 290117 ACATTCTCGATCGTATCTGAAGCTTCGACCTCCAGCGTGATAGTTTTACCAGTGAGAGTT 290176 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 290177 TTGACAAAAATCTGCAT 290193 >seq3043 Length=1629123 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||||||||| ||||| | | || | |||||| |||||||| ||||| ||||||| Sbjct 1068045 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1067986 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || ||||| || || |||| ||| ||||||||||||||||| || || || | Sbjct 1067985 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 1067926 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||| || |||||| || |||||||| || || || || |||||||| || || || | Sbjct 1067925 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGA 1067866 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 1067865 AGATCTGCAT 1067856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159087558755735