Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3660 145 5e-30 seq3806 141 6e-29 seq3043 134 9e-27 >seq3660 Length=1598725 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | ||||| || || || ||||| |||||||| | | Sbjct 291333 ATGCAGATTTTCGTGAAGACATTGACGGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 291274 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | ||||| ||| || || || |||||| | || || ||||| Sbjct 291273 GACACTATTGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGTATCCCACCTGATCAG 291214 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || |||||||| || || |||||||| | ||| ||||| |||||||| Sbjct 291213 CAGCGTTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 291154 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || ||||| | ||||||||| | || ||||| || ||| Sbjct 291153 ATTCAGAAGGAATCCACTCTCCATTTAGTTCTCAGATTGCGTGGTGGA 291106 Score = 127 bits (140), Expect = 1e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || ||||| || ||||| | |||||||| | | Sbjct 290421 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290362 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| || ||||||||||| | || || || || Sbjct 290361 GACACTATTGAGAATGTCAAGGCCAAAA-TTCAAGACAAAGAAGGAATCCCACCGGACCA 290303 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | || || || ||||| |||||||| ||||||| || |||||| || ||| Sbjct 290302 GCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTT--CTGACTAC 290245 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || |||||||| ||||| ||||| ||| | || || || Sbjct 290244 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGG 290195 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || ||||| ||||| || || || || | | Sbjct 290193 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCA 290134 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | |||||| ||||| |||||| | || || ||||| Sbjct 290133 GATACGATCGAGAATGTCAAAGC-TAAAATTCAGGACAAGGAAGGTATCCCACCGGATCA 290075 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | || || || ||||| |||||||| ||||||| || |||||| || ||| Sbjct 290074 GCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTT--CTGACTAC 290017 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || |||||||| ||||| ||||| ||| | || || || Sbjct 290016 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGG 289967 Score = 118 bits (130), Expect = 7e-22 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || ||||| || ||||| | |||||||| | | Sbjct 290649 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCA 290590 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| || ||||||||||| | || || || || Sbjct 290589 GACACTATTGAGAATGTCAAGGCCAAAA-TTCAAGACAAAGAAGGAATCCCACCGGACCA 290531 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | || || || ||||| |||||||| ||||||| || |||||| | ||||| Sbjct 290530 GCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTG--ATTAC 290473 Query 23788 AACATACAAAAAGAGTCCACATTACAT 23814 ||||| ||||| || || || || ||| Sbjct 290472 AACATTCAAAAGGAATCTACCTTGCAT 290446 Score = 118 bits (130), Expect = 7e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||||| || ||||| || ||||| | |||||||| | | Sbjct 291106 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 291047 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | |||| || ||||||||||| | || ||||||| Sbjct 291046 AGACACGATCGAGAATGTCAAGGCCAAAA-TTCAAGACAAAGAAGGAATCCCCCCAGATC 290988 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || || || || |||||||| ||||||| || || | || |||| Sbjct 290987 AGCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACA 290928 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || || ||||| |||||||| ||||| ||| Sbjct 290927 ATATTCAGAAAGAATCCACATTGCATTTGGTT 290896 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || ||||| || ||||| | |||||||| | | Sbjct 290877 ATGCAAATTTTCGTCAAAACTCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 290818 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| || ||||||||||| | || |||||||| Sbjct 290817 GACACGATCGAGAATGTCAAGGCCAAAA-TTCAAGACAAAGAAGGAATCCCCCCAGATCA 290759 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || |||||||| ||||||| || || | || ||||| Sbjct 290758 GCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAA 290699 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| |||||||| ||||| ||| Sbjct 290698 TATTCAGAAAGAATCCACATTGCATTTGGTT 290668 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || ||||| || || || || || || | | Sbjct 289965 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 289906 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || |||||| || |||||||| | || || |||||| Sbjct 289905 GACACGATCGAAAACGTGAAGGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAA 289846 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || || ||||| || || || || | ||| |||||| || || || Sbjct 289845 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCAGACTATAAT 289786 Query 23791 ATACAAAAAGAGTCCACA 23808 || || ||||| || ||| Sbjct 289785 ATTCAGAAAGAATCTACA 289768 >seq3806 Length=402996 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| || || ||||||||||| | | Sbjct 3234 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3293 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||||| |||||||| || | || || ||||| Sbjct 3294 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3353 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||||||||||| | | ||| | |||||||| Sbjct 3354 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3413 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| |||||| | || ||||||||| | | || ||||| Sbjct 3414 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 3461 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| || || || ||||| |||||||| |||||||| || | Sbjct 2778 AATGCAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2837 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| ||||| || || ||||||||||| | || || || || Sbjct 2838 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 2897 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTAC 23787 || ||||| || ||||| || |||||| ||||||||| | |||| | | || || Sbjct 2898 GCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCG--GACTAT 2955 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| |||||||| || || | ||||| ||| | | | ||||||||| Sbjct 2956 AACATTCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGGA 3006 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| || || ||||||||||| | | Sbjct 3006 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTC 3065 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||||| |||||||| || | || || ||||| Sbjct 3066 AGATACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 3125 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||||| ||||| | | ||| | |||||||| Sbjct 3126 ACAGCGTCTGATTTTCGCCGGCAAACAACTAGAAGATGGCAGAACTCTTTCTGATTACAA 3185 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| | || | ||||| | | ||||||||| Sbjct 3186 CATTCAGAAAGAATCCACGCTTCACCTGGTTTTGCGTCTTCGAGGAGGA 3234 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| |||||||| |||||||| || | Sbjct 2550 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 2609 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| ||||| || || ||||||||||| | || || || || Sbjct 2610 TGATACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 2669 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTAC 23787 || || || || ||||| || ||||| ||||||| | | |||||| || || Sbjct 2670 GCAACGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGGACACTTT--CAGACTAT 2727 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || || || ||||| | ||| | ||| | | | ||||||||| Sbjct 2728 AACATCCAGAAGGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGGA 2778 >seq3043 Length=1629123 Score = 134 bits (148), Expect = 9e-27 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| ||||| || || ||||| || || || | Sbjct 1067856 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 1067915 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || | | ||||| || || | ||||||||||| Sbjct 1067916 GATACTATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGAATTCCGCCAGATCA 1067974 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| ||||| || | ||||||||| ||||||||| Sbjct 1067975 ACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAA 1068034 Query 23790 CATACAAAAAG 23800 ||| ||||||| Sbjct 1068035 CATCCAAAAAG 1068045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337991725524212