Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3641 116 5e-21 seq3973 87.8 2e-12 seq3719 87.8 2e-12 >seq3641 Length=2987713 Score = 116 bits (128), Expect = 5e-21 Identities = 193/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 |||| | || ||||| || |||| | ||| | |||||||||| || || || |||| Sbjct 2542262 GAAATTACCTGGACATCTGCTGATTATTAGTACAGGCATTAAATAGAGTTGGTGAAGCAT 2542203 Query 78430 GCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 | ||||| || ||| || || || ||| |||||||| || || || || | | Sbjct 2542202 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATATTATTT 2542144 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | |||||| || || ||||| | |||||||||||| ||||| || || || ||||| | Sbjct 2542143 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 2542084 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || ||||||| || ||| | | || | ||||||||||||| ||| || || ||| Sbjct 2542083 TTGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 2542024 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 || | || || || ||| | |||| | ||| ||| Sbjct 2542023 TCACGATCATATATTATAGCGGAATCCAATTTCTCT 2541988 Score = 107 bits (118), Expect = 3e-18 Identities = 194/280 (69%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCT-CTG-TTAAAACTCTAAGGAGATGAGGAT 77118 ||||| ||||| || | ||| | ||||| ||| ||||| ||| || | ||| |||| Sbjct 2543979 TTCTTCATATCTTCGTCCCATAGA--CCTCTACTGGTTAAATCTCGCAGTAAATGCGGAT 2543922 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | || || |||||||||||||||||| | | || ||||| || ||||| |||| Sbjct 2543921 TGACAATAATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTT 2543862 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||| || || || ||||| || || || || || |||||||||||||| | | Sbjct 2543861 CAATGGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTA 2543802 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | | | |||||| | || || | ||| || | || | | | ||||||||| | Sbjct 2543801 AAAGAGAATTTCTTACTCCGTGCTTCGCGATCTTCGCCTTCAATTCATCCCAATCCCATA 2543742 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || || ||| ||| | ||| | ||| ||||| ||||| Sbjct 2543741 AATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 2543702 Score = 102 bits (112), Expect = 1e-16 Identities = 227/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||| ||||| | ||| || || | | |||| ||||||||| | |||| Sbjct 2543388 TACCAATAGGTCTGTGTCTGTGATTAGATGTTCTCGTTTCTTCGATAGGATAAAAGTTAA 2543329 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || || | ||||| ||||| | | || | ||| | || || |||||| | Sbjct 2543328 CATCGATGACTTTATCTAGATTACGAGTGACGATTTTTGCGACTGTTTTAAGTTTATCGA 2543269 Query 77644 AATC--AAATCTT-CCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||| |||| || |||| |||| |||||||| | ||| |||||||||| ||| | Sbjct 2543268 AATCGAAAATTTTGGTGTCTATATTAACGAACATGTTGACAGCGATAGATGCTAAATTGC 2543209 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || || || | ||||| || || ||||| || | || || |||| Sbjct 2543208 ATACAGCGACTTCTCCAGGACCAGAATATTCAATAATTTCGGTGCACAAGTTGCTGCATT 2543149 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 ||| |||||| | || ||| || || ||| |||| |||| || || ||||| ||| Sbjct 2543148 TGACAGTGCCTATATGTTGATGATTCGATTTTCGGTTGCAATGA-TCTTTGTAAAGCATA 2543090 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || || ||||| | || ||| || ||| Sbjct 2543089 TAAGGTGTTCCAGTTTCTACTTGGGATCTGAGAAT 2543055 >seq3973 Length=340871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || || ||||||||||| || || || ||||| || || ||||| | ||||| Sbjct 332 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 391 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || | || || | ||| ||| || ||||||||| || || ||||| | Sbjct 392 GGAATTTTCACTTCTTGGCTGAATTTCTCAATCAGATTCTCATTAACGATACCATCGGAA 451 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT---A 48608 || ||||| |||||||| ||||| ||||| ||| || | |||| | ||||| | Sbjct 452 GCGGCAAAGAATGCTAAGACATGAGAGATAAAGCGTTTCTCATCGGAATTTAGTTTTTCA 511 Query 48609 TTCCAGTCATTGATATCTT 48627 |||||||| || | |||| Sbjct 512 TTCCAGTCCTTTTTGTCTT 530 >seq3719 Length=734917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || ||||||| | ||| ||||| |||||||||||||| |||| ||| ||||| | |||| Sbjct 301898 CACCACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGATGCTA 301839 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | |||||||| |||||||| || | ||| ||||| |||| || || | ||| Sbjct 301838 AGGTTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAGGTTAT 301779 Query 78859 CTAACTCTATAGTTGTGACCCCA 78881 | || || | ||||| || ||| Sbjct 301778 CCAATTCGCTTGTTGTCACTCCA 301756 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 77356 ATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG---CTAGTTCACAACTCGCTTCCA 77412 |||| ||||| | |||||||| |||| |||||| ||| ||| ||||| ||||| | Sbjct 303662 ATCC-TTATAAGACTCATAAGGACCTT---TTTCAGTAGCTATTTCGCAACTGGCTTCTA 303607 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 || || ||||| | || || ||||| | ||||| || | ||||| | || | Sbjct 303606 GAGCGCCATAATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTT 303547 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 |||| ||||| | | |||||| |||||||||||||| || || |||||||| Sbjct 303546 CAAATGGATATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 303492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694631122900960