Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3806 190 5e-43 seq3660 168 2e-36 seq3043 161 2e-34 >seq3806 Length=402996 Score = 190 bits (210), Expect = 5e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| || ||||| || |||||||| || ||| ||||| Sbjct 3238 CAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTCAGAT 3297 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || || ||||||||||| ||||| || ||||| || || Sbjct 3298 ACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCAACAG 3357 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || |||||||| || |||||| | ||||| ||| || Sbjct 3358 CGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACATC 3417 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||| || | ||||| |||| Sbjct 3418 CAAAAAGAATCCACACTCCACTTAGTTTTACGACT 3452 Score = 181 bits (200), Expect = 3e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| || ||||| ||||| || || || ||| ||| || Sbjct 2554 CAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCTGAT 2613 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||||| || ||||||||||| || ||||| ||||||||| Sbjct 2614 ACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAA 2673 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || |||||| | |||||||| ||||| ||| | || |||||| || Sbjct 2674 CGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGGACACTTTCAGACTATAACATC 2733 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||||| ||| || Sbjct 2734 CAGAAGGAATCCACGCTTCATCTGGTTCTG 2763 Score = 181 bits (200), Expect = 3e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| || ||||| || |||||||| || ||| ||||| Sbjct 3010 CAAATCTTCGTGAAAACTCTCACCGGTAAAACAATTACCCTCGAAGTTGAAGCTTCAGAT 3069 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || || ||||||||||| ||||| || ||||| || || Sbjct 3070 ACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCACCGGATCAACAG 3129 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || |||||||| || |||||| | ||||| ||| | Sbjct 3130 CGTCTGATTTTCGCCGGCAAACAACTAGAAGATGGCAGAACTCTTTCTGATTACAACATT 3189 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| || || || || |||||| Sbjct 3190 CAGAAAGAATCCACGCTTCACCTGGTTTTG 3219 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||||||||| |||||||| || ||||| ||||| ||| || || Sbjct 2098 CAAATCTTTGTAAAAACTCTCACTGGAAAAACCATTACCCTTGAGGTAGAAGCTTCTGAT 2157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||||| || ||||||||||| || ||||| || |||||| Sbjct 2158 ACTATCGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAGCAA 2217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || | || ||||| || |||||| | || || ||| || Sbjct 2218 CGTTTGATCTTTGCTGGAAAGCAATTAGAGGATGGCAGAACTCTTTCTGACTACAACATC 2277 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||||||||| || Sbjct 2278 CAGAAGGAATCTACGCTTCATCTTGTTCTG 2307 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||||| || || ||||| ||||| || || || ||| ||| ||| Sbjct 2782 CAAATCTTCGTGAAAACTCTTACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCTGAC 2841 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||||| || ||||||||||| || ||||| ||||||||| Sbjct 2842 ACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAA 2901 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| || ||||| || | || |||||| | Sbjct 2902 CGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGTAGGACACTCTCGGACTATAACATT 2961 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| || || ||| | ||| || Sbjct 2962 CAAAAAGAATCTACCCTTCATTTGGTTCTG 2991 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || ||||| || ||||| || || ||| || ||| Sbjct 2326 CAGATCTTTGTAAAAACTCTTACGGGTAAAACCATTACCCTTGAAGTCGAAGCTTCGGAC 2385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| |||||||| ||||| || ||||| ||||| Sbjct 2386 ACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCGGATCAGCAG 2445 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || || |||||||| || ||||| | |||||||| | Sbjct 2446 CGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTATAATATT 2505 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| ||||| || |||| || Sbjct 2506 CAAAAAGAATCCACACTTCA-CTTGGTT 2532 >seq3660 Length=1598725 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| |||||||| || ||||| | || || || |||||| Sbjct 290646 CAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCAGAC 290587 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 290586 ACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAGCAG 290527 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||||||||| || ||||| || | || ||| | ||||| ||| | Sbjct 290526 AGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGTCGTACACTTTCTGATTACAACATT 290467 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || ||||||| || Sbjct 290466 CAAAAGGAATCTACCTTGCATCTGGT 290441 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||||||||| || ||||| ||||| || ||||| ||| ||||| Sbjct 290190 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATCACGCTGGAGGTCGAAGCTTCAGAT 290131 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || ||||||||||| ||||| ||||| ||||| ||||| Sbjct 290130 ACGATCGAGAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCACCGGATCAGCAG 290071 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||||||||| || ||||| || | || ||| | || || || | Sbjct 290070 AGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAATATT 290011 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| ||| ||||| | |||||||| || Sbjct 290010 CAGAAGGAATCCACATTGCATTTGGTTTTGAGGCT 289976 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| |||||||| || ||||| | || || || |||||| Sbjct 290418 CAAATTTTCGTCAAAACTCTGACAGGAAAGACTATCACATTGGAAGTTGAGGCGTCAGAC 290359 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 290358 ACTATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCGGACCAGCAG 290299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||||||||| || ||||| || | || ||| | || || || | Sbjct 290298 AGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGGCGTACACTTTCTGACTACAATATT 290239 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| ||| ||||| | |||||||| || Sbjct 290238 CAGAAGGAATCCACATTGCATTTGGTTTTGAGGCT 290204 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| |||||||| || ||||| | || || || |||||| Sbjct 290874 CAAATTTTCGTCAAAACTCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCAGAC 290815 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| || ||||| ||||||||||||||||| || || ||||| Sbjct 290814 ACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAGCAG 290755 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||| || ||||| || | || ||| | || || || | Sbjct 290754 AGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAATATT 290695 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| ||| ||||| | ||| Sbjct 290694 CAGAAAGAATCCACATTGCATTTGGTT 290668 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||||||||| || ||||| || || || ||||| || |||||| Sbjct 289962 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCAGAC 289903 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || |||||||| |||||||| || ||||| || || ||| Sbjct 289902 ACGATCGAAAACGTGAAGGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAACAA 289843 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| || || ||||| || |||||| ||||| | | || ||||| | Sbjct 289842 AGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCAGACTATAATATT 289783 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| ||||| || ||||| | |||| ||| Sbjct 289782 CAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 289744 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || |||||||| || ||||| | || || || |||||| Sbjct 291102 CAGATCTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCAGAC 291043 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| || ||||| ||||||||||||||||| || || ||||| Sbjct 291042 ACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAGCAG 290983 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||| || ||||| || | || ||| | || || || | Sbjct 290982 AGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGACTACAATATT 290923 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| ||| ||||| | ||| Sbjct 290922 CAGAAAGAATCCACATTGCATTTGGTT 290896 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || || || || || || || || || || ||| Sbjct 291330 CAGATTTTCGTGAAGACATTGACGGGGAAGACCATAACTCTTGAAGTTGAGGCTTCTGAC 291271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| ||||| || ||||| ||||| || || ||||| Sbjct 291270 ACTATTGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGTATCCCACCTGATCAGCAG 291211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| ||||| ||||||||| | ||| | | ||||| || | Sbjct 291210 CGTTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAATATT 291151 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||||| || || ||| | ||| | ||| Sbjct 291150 CAGAAGGAATCCACTCTCCATTTAGTTCTCAGA 291118 >seq3043 Length=1629123 Score = 161 bits (178), Expect = 2e-34 Identities = 148/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || ||||| || ||||||||||| || ||| || Sbjct 1067859 CAGATCTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCTGAT 1067918 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| |||||||| || ||||| || || || || || Sbjct 1067919 ACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAACAG 1067978 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| |||||||| || |||||| | ||| | ||||||| ||| || Sbjct 1067979 CGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAACATC 1068038 Query 178104 CAAAAAG 178110 ||||||| Sbjct 1068039 CAAAAAG 1068045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203664280444766