Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acromyrmex_20echinatior_20[refseq_20GCF_5F000204515.1_202011-05-03] 4,339 sequences; 295,944,863 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3660 102 8e-17 seq3806 98.7 9e-16 seq3043 93.3 4e-14 >seq3660 Length=1598725 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || |||| ||||| ||| ||||||||||| || ||||| || Sbjct 289967 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290026 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| |||| || || || || |||||||| |||| | ||| || |||| || Sbjct 290027 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 290086 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| |||| || | | || || | || || Sbjct 290087 ATACCTTCCTTGTCC-TGAATTTTAGCTTTGACATTCTCGATCGTATCTGAAGCTTCGAC 290145 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| || |||||||| || || || || || ||||||||||| Sbjct 290146 CTCCAGCGTGATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 290193 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || |||| ||||| ||| ||||||||||| || ||||| || Sbjct 290195 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 290254 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| |||| || || || || |||||||| |||| | ||| ||||||| || Sbjct 290255 AGTGTACGCCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 290314 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| | ||| | | | |||||| || ||| || Sbjct 290315 ATTCCTTCTTTGT-CTTGAATTTTGGCCTTGACATTCTCAATAGTGTCTGACGCCTCAAC 290373 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| || || |||||||| ||||| Sbjct 290374 TTCCAATGTGATAGTCTTTCCTGTCAGAGTTTTGACGAAAATTTGCAT 290421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || |||||||| |||||||| || | || || | || || ||||||||||| ||||| Sbjct 289775 TCTTTCTGAATATTATAGTCTGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAA 289834 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||||| || | |||| || || || ||| ||| |||| || | ||| Sbjct 289835 ATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCC-TGAATTTTCGCCTTCACGTT 289893 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| ||||||| ||| || |||||||| || || || || || Sbjct 289894 TTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGAC 289953 Query 41851 GAAAATCTGCAT 41862 ||||||||||| Sbjct 289954 AAAAATCTGCAT 289965 >seq3806 Length=402996 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || ||||| || |||||| || ||||||||||| || || || Sbjct 3233 CCTCCTCGAAGACGCAAAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCAGAA 3174 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || || ||||||||||| ||||| |||||||| |||| ||| Sbjct 3173 AGAGTTCTGCCATCTTCTAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3114 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| |||||| |||| ||| | | || || | || || Sbjct 3113 ATTCCCTCTTTGTCCTGGATTTTGGCCTTC-ACGTTTTCGATGGTATCTGAAGCTTCAAC 3055 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || |||||||| || || || || ||||| || ||||| Sbjct 3054 TTCGAGGGTAATTGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| || || ||||| ||||| || ||| Sbjct 2549 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 2490 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || |||||||| || || ||||| ||||| || |||| |||| Sbjct 2489 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 2430 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||| ||||| ||| |||| |||| || || | |||| | || || Sbjct 2429 ATTCCCTCTTTGTCT-TGAATTTTGGCTTTCACATTTTCAATGGTGTCCGAAGCTTCGAC 2371 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||||||||| || || ||||| || ||||||||| Sbjct 2370 TTCAAGGGTAATGGTTTTACCCGTAAGAGTTTTTACAAAGATCTGCATG 2322 >seq3043 Length=1629123 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || || ||||| || ||||| | ||||| | || || ||||| ||||||||||| || Sbjct 1068043 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1067984 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || |||||||| || | |||| | |||||||||| ||| || ||| | | Sbjct 1067983 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1067924 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | ||| || | ||| ||||| | || || ||||||||||| || || || ||||| Sbjct 1067923 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGAAG 1067864 Query 41855 ATCTGCATG 41863 ||||||||| Sbjct 1067863 ATCTGCATG 1067855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462278925786800